# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 6.60e-14 a.24.15.1 87264 1jr8A 117 1.80e-13 a.24.15.1 67115 2aj0A 71 1.369 2nytA 190 3.048 1wkqA 164 4.174 c.97.1.2 109393 1wn5A 130 5.936 c.97.1.1 121082 1cttA 294 6.535 c.97.1.1,c.97.1.1 36022,36023 1cc8A 73 7.078 d.58.17.1 39343 1ctt 294 8.829 2z3hA 130 10.88 2q3pA 112 11.23 d.58.4.4 139798 2h8lA 252 11.71 2sasA 185 13.48 a.39.1.5 17258 2fiyA 309 14.68 e.59.1.1 133540 1va6A 518 15.79 d.128.1.4 113598 1rp4A 389 17.18 a.227.1.1 105027 2q01A 497 17.83 1uwzA 136 18.77 c.97.1.1 108081 1r5tA 142 19.19 c.97.1.1 104812 1jtkA 136 19.63 c.97.1.1 71862 1a99A 344 21.29 c.94.1.1 35812 1mwyA 73 21.78 d.58.17.1 79616 2ahmA 88 22.05 a.8.9.1 126760 2vlgA 111 23.65 2f2lA 167 23.82 d.118.1.1 132843 2oy9A 98 24.40 2nx8A 179 24.76 2agaA 190 24.77 2eppA 66 25.00 1z3aA 168 28.24 c.97.1.2 124396 2hjnA 236 28.53 1vq2A 193 28.81 c.97.1.2 114004 1y3jA 77 29.13 2a8nA 144 30.03 c.97.1.2 126408 2fqhA 109 30.27 1dxsA 80 30.69 a.60.1.2 17944 2b3jA 159 30.96 c.97.1.2 127787 1fe0A 68 31.95 d.58.17.1 39345 2p09A 78 32.53 1tr0A 108 32.85 d.58.4.4 107261 2ds5A 51 33.54 g.39.1.11 131681 1gu9A 177 34.84 a.152.1.1 65540 1cf7B 95 36.38 a.4.5.17 16152 1ovxA 67 36.61 g.39.1.11 93622 1zu1A 127 36.77 1rwjA 82 36.85 a.138.1.1 105114 3b8fA 142 38.39 2fr5A 146 40.93 c.97.1.1 133965 1tiyA 164 41.31 c.97.1.2 107012 1vkeA 133 43.09 a.152.1.2 108650 1c8cA 64 44.16 b.34.13.1 59084 1azpA 66 44.75 b.34.13.1 37467 2hvwA 184 45.13 1p6oA 161 45.17 c.97.1.2 94185 1xyiA 66 47.31 1v1dA 31 47.42 j.6.1.1 119817 2bijA 305 47.75 2af4C 333 48.22 c.77.1.5 126656 2ezhA 75 48.45 a.4.1.2 16029 1osdA 72 50.25 d.58.17.1 104022 2h21A 440 50.72 a.166.1.1,b.85.7.3 135976,135977 2f2lX 167 50.76 d.118.1.1 132844 1faoA 126 51.77 b.55.1.1 26974 1d4vA 117 52.48 g.24.1.1,g.24.1.1,g.24.1.1 44915,44916,44917 1uw1A 80 53.24 k.42.1.1 100069 1lw1A 177 53.68 a.152.1.1 74290 2dx8A 67 55.64 2ebdA 309 63.17 1ykhA 108 63.47 a.252.1.2 123518 1oohA 126 63.90 a.39.2.1 93383 1mhqA 148 65.02 a.118.9.2 84973 2jwhA 48 65.44 2qeuA 141 65.60 1sxrA 183 66.59 d.118.1.1 106101 1anf 370 70.38 4mbp 370 71.28 1gyxA 76 72.57 d.80.1.1 76387 1nhyA 219 73.57 a.45.1.1,c.47.1.5 80520,80521 1smbA 154 75.35 d.111.1.1 105756 1kv4A 42 75.78 j.4.1.3 73051 2g84A 197 76.23 c.97.1.2 134766 2elxA 35 76.34 1j3gA 187 76.98 d.118.1.1 77075 1gpuA 680 79.14 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 2iazA 113 81.44 2bexA 460 81.65 c.10.1.1 128398 3craA 265 81.76 2j9wA 102 82.01 1n5uA 585 83.52 a.126.1.1,a.126.1.1,a.126.1.1 85339,85340,85341 2qk2A 242 83.95 2g3kA 94 84.53 a.24.28.1 134562 2yrmA 43 85.37 1ppt 36 85.88 2pqxA 245 87.84 3c8yA 574 88.24 2i3sB 36 89.67