# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 2.06e-15 a.24.15.1 87264 1jr8A 117 5.76e-15 a.24.15.1 67115 2aj0A 71 2.327 2nytA 190 4.673 1wn5A 130 4.972 c.97.1.1 121082 1cttA 294 6.921 c.97.1.1,c.97.1.1 36022,36023 1cc8A 73 7.645 d.58.17.1 39343 1wkqA 164 7.802 c.97.1.2 109393 2h8lA 252 9.285 1ctt 294 9.883 2z3hA 130 10.79 2fiyA 309 13.33 e.59.1.1 133540 2agaA 190 14.14 1va6A 518 16.57 d.128.1.4 113598 1z3aA 168 17.56 c.97.1.2 124396 1uwzA 136 22.51 c.97.1.1 108081 1jtkA 136 22.94 c.97.1.1 71862 2q3pA 112 24.57 d.58.4.4 139798 1jvrA 137 26.25 a.61.1.2 18132 2a8nA 144 27.12 c.97.1.2 126408 1r5tA 142 28.11 c.97.1.1 104812 2ds5A 51 28.26 g.39.1.11 131681 1c8cA 64 28.85 b.34.13.1 59084 2b3jA 159 29.20 c.97.1.2 127787 2nx8A 179 30.10 1j55A 95 30.12 a.39.1.2 77078 1p6oA 161 30.70 c.97.1.2 94185 2hi7B 176 30.75 1rp4A 389 30.99 a.227.1.1 105027 1vq2A 193 31.53 c.97.1.2 114004 1ovxA 67 31.75 g.39.1.11 93622 1gpuA 680 31.90 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1fe0A 68 32.45 d.58.17.1 39345 1cf7B 95 32.77 a.4.5.17 16152 2jwhA 48 33.23 2vlgA 111 33.35 1rlr 761 33.54 1mwyA 73 34.27 d.58.17.1 79616 1a99A 344 35.00 c.94.1.1 35812 1azpA 66 40.26 b.34.13.1 37467 1dxsA 80 40.41 a.60.1.2 17944 2g84A 197 40.51 c.97.1.2 134766 1xyiA 66 41.06 2pqxA 245 41.52 2ahmA 88 43.17 a.8.9.1 126760 3b8fA 142 45.62 2q01A 497 45.81 2fr5A 146 47.16 c.97.1.1 133965 2sasA 185 47.30 a.39.1.5 17258 2hvwA 184 47.63 1kv4A 42 49.33 j.4.1.3 73051 1y3jA 77 50.19 2f2lA 167 50.35 d.118.1.1 132843 2oy9A 98 51.17 2eppA 66 51.52 1brvA 32 52.31 j.33.1.1 46235 1vlbA 907 52.69 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 2h21A 440 54.74 a.166.1.1,b.85.7.3 135976,135977 1wlzA 105 55.41 a.39.1.7 121024 2hq9A 149 55.60 b.45.1.1 136659 1tiyA 164 56.37 c.97.1.2 107012 1dq3A 454 56.38 b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1zu1A 127 57.63 1ubkL 534 57.83 e.18.1.1 88422 2ap3A 199 58.90 a.24.27.1 127110 2i3sB 36 60.53 2dx8A 67 61.76 2ouiA 360 64.17 2p09A 78 65.31 1ykhA 108 66.11 a.252.1.2 123518 2iazA 113 68.02 1yzbA 182 70.77 1rwjA 82 71.03 a.138.1.1 105114 1vkeA 133 72.64 a.152.1.2 108650 1faoA 126 72.90 b.55.1.1 26974 1tadA 324 73.45 a.66.1.1,c.37.1.8 18194,32077 2fccA 137 75.86 a.18.1.1 133264 2j9wA 102 76.40 1v1dA 31 76.75 j.6.1.1 119817 2heuA 401 77.01 1osdA 72 78.01 d.58.17.1 104022 2d58A 107 78.43 2g3kA 94 78.93 a.24.28.1 134562 1o1xA 155 79.87 c.121.1.1 86553 1x9zA 188 80.16 d.292.1.1 115019 1oohA 126 80.37 a.39.2.1 93383 1tr0A 108 85.89 d.58.4.4 107261 1gu9A 177 87.23 a.152.1.1 65540 1lu4A 136 88.58 c.47.1.10 91124