# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 1.26e-14 a.24.15.1 87264 1jr8A 117 2.74e-14 a.24.15.1 67115 1wn5A 130 0.7382 c.97.1.1 121082 2aj0A 71 0.9214 1cc8A 73 1.748 d.58.17.1 39343 2nytA 190 1.756 1wkqA 164 2.340 c.97.1.2 109393 2z3hA 130 2.432 1cttA 294 3.362 c.97.1.1,c.97.1.1 36022,36023 1ovxA 67 4.160 g.39.1.11 93622 2ds5A 51 4.258 g.39.1.11 131681 1va6A 518 4.281 d.128.1.4 113598 1ctt 294 4.433 1fe0A 68 5.931 d.58.17.1 39345 1dxsA 80 6.107 a.60.1.2 17944 2g84A 197 6.530 c.97.1.2 134766 1z3aA 168 6.772 c.97.1.2 124396 2q01A 497 6.930 2a8nA 144 7.058 c.97.1.2 126408 2nx8A 179 7.181 1c8cA 64 7.671 b.34.13.1 59084 2b3jA 159 7.944 c.97.1.2 127787 1r5tA 142 9.314 c.97.1.1 104812 1ubkL 534 9.847 e.18.1.1 88422 2sasA 185 10.03 a.39.1.5 17258 2p09A 78 10.45 1uwzA 136 10.59 c.97.1.1 108081 2q3pA 112 10.78 d.58.4.4 139798 1jtkA 136 11.16 c.97.1.1 71862 1p6oA 161 11.24 c.97.1.2 94185 2agaA 190 11.81 2bijA 305 12.21 2dx8A 67 12.67 1azpA 66 13.30 b.34.13.1 37467 1tadA 324 13.67 a.66.1.1,c.37.1.8 18194,32077 1vkeA 133 14.14 a.152.1.2 108650 1vq2A 193 14.56 c.97.1.2 114004 1uw1A 80 15.46 k.42.1.1 100069 2h8lA 252 15.68 2f2lA 167 16.19 d.118.1.1 132843 2ezhA 75 16.33 a.4.1.2 16029 1xyiA 66 16.45 1wwrA 171 18.04 c.97.1.2 121366 2pd2A 108 18.36 2fr5A 146 18.59 c.97.1.1 133965 2eppA 66 18.95 2qeuA 141 19.36 1tiyA 164 19.38 c.97.1.2 107012 2oy9A 98 19.50 1rp4A 389 19.97 a.227.1.1 105027 1jvrA 137 20.03 a.61.1.2 18132 1v1dA 31 21.16 j.6.1.1 119817 3b8fA 142 21.16 1gu9A 177 21.17 a.152.1.1 65540 3craA 265 21.54 2hi7B 176 21.56 1a99A 344 21.78 c.94.1.1 35812 2h21A 440 21.89 a.166.1.1,b.85.7.3 135976,135977 1wimA 94 22.42 g.44.1.1 114677 1v32A 101 22.84 a.42.1.1 100277 1e3dB 542 23.27 e.18.1.1 59189 2fiyA 309 23.51 e.59.1.1 133540 1osdA 72 23.80 d.58.17.1 104022 1h2rL 534 25.22 e.18.1.1 43298 1t4fM 110 26.50 a.42.1.1 119144 1yzbA 182 26.86 2hvwA 184 27.83 1o1xA 155 28.56 c.121.1.1 86553 2vlgA 111 28.63 1smbA 154 28.78 d.111.1.1 105756 1ecmA 109 29.09 a.130.1.1 19492 1lw1A 177 29.21 a.152.1.1 74290 1tdpA 111 30.84 a.29.8.1 106781 1rwjA 82 31.98 a.138.1.1 105114 1t15A 214 32.60 c.15.1.3,c.15.1.3 99067,99068 2ahmA 88 33.08 a.8.9.1 126760 1ppt 36 33.48 2ouiA 360 34.38 1tr0A 108 34.43 d.58.4.4 107261 2yrmA 43 34.70 2eqoA 140 35.97 2heuA 401 36.46 2ap3A 199 36.67 a.24.27.1 127110 1d66A 66 38.02 g.38.1.1,h.1.3.1 45076,45510 2ctuA 73 38.32 2hszA 243 42.02 c.108.1.6 136726 1ykhA 108 42.64 a.252.1.2 123518 1a1gA 90 43.99 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 4mbp 370 44.03 1a1hA 90 44.13 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1xzwA 426 44.51 b.1.12.1,d.159.1.1 116270,116271 2gmyA 153 45.04 a.152.1.3 135398 1zcbA 362 45.75 a.66.1.1,c.37.1.8 124901,124902 1anf 370 45.96 1ku1A 230 46.26 a.118.3.1 72996 1zaaC 87 46.67 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 2hl7A 84 46.71 1g2fC 90 47.23 k.12.1.1 60222 2jwhA 48 47.87 2obiA 183 48.63 1oohA 126 48.68 a.39.2.1 93383 2hq9A 149 48.80 b.45.1.1 136659 1njqA 39 49.11 g.37.1.3 85822 1izoA 417 49.66 a.104.1.1 83851 2f2lX 167 50.41 d.118.1.1 132844 1zgwA 139 51.08 2iazA 113 51.49 1bc8C 93 52.11 a.4.5.21 16168 1yjrA 75 52.80 1v5nA 89 53.91 g.49.1.3 108380 1u8bA 133 54.74 1j55A 95 55.16 a.39.1.2 77078 2fccA 137 55.53 a.18.1.1 133264 1faoA 126 55.62 b.55.1.1 26974 1e1hB 174 55.74 2pqxA 245 56.06 2beqD 48 57.06 1ua4A 455 57.25 c.72.1.3 99128 2aalA 131 57.79 d.80.1.6 126483 1aayA 90 57.80 g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 2gloA 59 58.00 2z3tA 425 58.17 2g3kA 94 58.41 a.24.28.1 134562 1gyxA 76 58.55 d.80.1.1 76387 1a1iA 90 59.13 g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1lu4A 136 59.54 c.47.1.10 91124 1y3jA 77 60.15 1x3zA 335 61.24 d.3.1.4 121673 1kzyC 259 61.68 c.15.1.4,c.15.1.4 73383,73384 2pu9A 110 61.70 1sxrA 183 62.38 d.118.1.1 106101 1zu1A 127 62.53 1cipA 353 62.93 a.66.1.1,c.37.1.8 18210,32093 1wilA 89 63.67 g.50.1.3 114676 1kv4A 42 63.84 j.4.1.3 73051 2d13A 227 64.27 c.26.2.1 131121 2b9dA 52 64.69 2grjA 192 66.61 2axiA 115 66.64 a.42.1.1 127494 2f6hX 419 66.91 2af4C 333 67.19 c.77.1.5 126656 2d58A 107 67.88 2cz9A 350 67.90 1sw2A 275 68.45 c.94.1.1 106064 2hjnA 236 68.70 2hdpA 63 68.95 1dljA 402 69.59 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2bbrA 195 70.45 2rfbA 343 70.89 3gcbA 470 71.30 d.3.1.1 37032 2czrA 226 71.85 2d8dA 90 72.97 a.130.1.1 131329 2bf9A 36 73.30 j.6.1.1 116717 2e01A 457 73.82 1iioA 84 74.82 a.39.4.1 66150 1mugA 168 75.02 c.18.1.2 31030 1co4A 42 75.65 g.47.1.1 45347 1rwyA 109 75.66 a.39.1.4 98002 1z5yE 149 76.53 c.47.1.10 124498 2p5qA 170 76.68 3ccgA 190 76.73 1pot 325 77.23 1dlcA 584 78.27 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1uslA 170 79.29 c.121.1.1 99871 2j9wA 102 79.67 1db1A 259 79.70 a.123.1.1 19329 1zcaA 359 80.12 a.66.1.1,c.37.1.8 124897,124898 2oyoA 196 80.74 1wrdA 103 80.93 2ajjA 28 81.04 1gc5A 467 81.11 c.72.1.3 60429 1yckA 175 81.21 d.118.1.1 122968 1xvjA 109 82.12 1ldjB 90 82.40 g.44.1.1 73850 1fgyA 127 82.46 b.55.1.1 26976 1vlbA 907 82.87 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1zejA 293 82.97 3b8mA 280 83.52 1st9A 143 83.56 c.47.1.10 98987 1ybzA 91 83.94 a.130.1.1 122901 2dfwA 396 84.71 1wgeA 83 85.00 g.41.17.1 120972 1i5gA 144 86.22 c.47.1.10 61784 2z1cA 75 86.84 2f1sA 186 87.05 1brvA 32 87.09 j.33.1.1 46235 2b1kA 168 88.18 1kaeA 434 88.86 c.82.1.2 72247 1n28A 124 88.96 a.133.1.2 91550 1gvfA 286 89.74 c.1.10.2 70599