# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	3.46e-14	a.24.15.1	87264
1jr8A	117	7.25e-14	a.24.15.1	67115
2aj0A	71	2.494		
1wkqA	164	5.339	c.97.1.2	109393
1cttA	294	6.518	c.97.1.1,c.97.1.1	36022,36023
1wn5A	130	6.899	c.97.1.1	121082
2nytA	190	7.470		
1ctt	294	9.95		
1cc8A	73	10.04	d.58.17.1	39343
2z3hA	130	12.53		
2h8lA	252	13.66		
2q3pA	112	14.57	d.58.4.4	139798
2a8nA	144	19.85	c.97.1.2	126408
2nx8A	179	20.16		
1j55A	95	23.44	a.39.1.2	77078
1mwyA	73	23.48	d.58.17.1	79616
2vlgA	111	24.03		
1va6A	518	25.00	d.128.1.4	113598
1vkeA	133	25.30	a.152.1.2	108650
2sasA	185	25.60	a.39.1.5	17258
1z3aA	168	26.34	c.97.1.2	124396
2hjnA	236	29.21		
1ovxA	67	29.24	g.39.1.11	93622
2ds5A	51	31.80	g.39.1.11	131681
1c8cA	64	32.81	b.34.13.1	59084
1tiyA	164	33.48	c.97.1.2	107012
2q01A	497	33.76		
2fqhA	109	34.72		
2b3jA	159	35.49	c.97.1.2	127787
2d58A	107	36.21		
1fe0A	68	36.51	d.58.17.1	39345
2hvwA	184	37.10		
2eppA	66	37.87		
2i3sB	36	38.22		
2af4C	333	38.27	c.77.1.5	126656
1xyiA	66	38.50		
2ahmA	88	38.93	a.8.9.1	126760
1uwzA	136	40.92	c.97.1.1	108081
2qeuA	141	41.06		
1ubkL	534	41.54	e.18.1.1	88422
2oy9A	98	42.08		
1rp4A	389	42.47	a.227.1.1	105027
2jwhA	48	43.25		
1jtkA	136	43.31	c.97.1.1	71862
1cf7B	95	44.21	a.4.5.17	16152
2g84A	197	44.26	c.97.1.2	134766
3b8fA	142	44.93		
1y3jA	77	45.33		
1azpA	66	45.43	b.34.13.1	37467
1p6oA	161	46.85	c.97.1.2	94185
1njgA	250	47.94	c.37.1.20	85785
1zu1A	127	48.86		
1a5t	334	49.61		
1wy9A	147	50.34		
1v1dA	31	53.15	j.6.1.1	119817
2h21A	440	54.90	a.166.1.1,b.85.7.3	135976,135977
1n62A	166	55.01	a.56.1.1,d.15.4.2	80090,80091
2p09A	78	55.25		
2fr5A	146	55.64	c.97.1.1	133965
2ezhA	75	57.42	a.4.1.2	16029
1oohA	126	58.34	a.39.2.1	93383
1r5tA	142	58.92	c.97.1.1	104812
1gu9A	177	59.07	a.152.1.1	65540
1a99A	344	61.31	c.94.1.1	35812
1vq2A	193	61.77	c.97.1.2	114004
1dxsA	80	62.96	a.60.1.2	17944
2c2xA	281	63.49		
2prrA	197	65.18		
2agaA	190	68.95		
1a5tA	334	69.20	a.80.1.1,c.37.1.20	18450,32423
1osdA	72	69.85	d.58.17.1	104022
1e8gA	560	71.21	d.58.32.1,d.145.1.1	39455,41718
1uw1A	80	73.43	k.42.1.1	100069
1mwwA	128	73.99	d.80.1.4	91483
1ykhA	108	75.06	a.252.1.2	123518
4mbp	370	76.22		
1pi1A	185	77.10	a.29.7.1	94699
1nhyA	219	77.62	a.45.1.1,c.47.1.5	80520,80521
1wlzA	105	79.81	a.39.1.7	121024
2ebdA	309	81.50		
1avsA	90	81.88	a.39.1.5	17226
1vlbA	907	82.99	a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1	108739,108740,108741,108742
1lw1A	177	83.72	a.152.1.1	74290
1tr0A	108	83.94	d.58.4.4	107261
1ppt	36	84.27		
1d4vA	117	84.65	g.24.1.1,g.24.1.1,g.24.1.1	44915,44916,44917
2j9wA	102	88.60