# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	5.77e-14	a.24.15.1	87264
1jr8A	117	1.30e-13	a.24.15.1	67115
2aj0A	71	3.766		
1wkqA	164	5.901	c.97.1.2	109393
1cttA	294	7.743	c.97.1.1,c.97.1.1	36022,36023
1wn5A	130	9.106	c.97.1.1	121082
2nytA	190	10.18		
1ctt	294	11.29		
2q3pA	112	12.48	d.58.4.4	139798
1cc8A	73	12.62	d.58.17.1	39343
2h8lA	252	14.68		
2a8nA	144	15.95	c.97.1.2	126408
2nx8A	179	17.80		
2z3hA	130	18.56		
1z3aA	168	20.27	c.97.1.2	124396
2fqhA	109	24.60		
1j55A	95	27.39	a.39.1.2	77078
2vlgA	111	28.09		
1va6A	518	29.10	d.128.1.4	113598
1mwyA	73	29.30	d.58.17.1	79616
2b3jA	159	29.30	c.97.1.2	127787
2hjnA	236	32.94		
1ovxA	67	33.45	g.39.1.11	93622
2ahmA	88	34.55	a.8.9.1	126760
1vkeA	133	35.45	a.152.1.2	108650
2eppA	66	35.81		
2g84A	197	37.23	c.97.1.2	134766
1tiyA	164	38.38	c.97.1.2	107012
2hvwA	184	39.82		
1p6oA	161	41.09	c.97.1.2	94185
2ds5A	51	41.45	g.39.1.11	131681
2q01A	497	42.12		
1cf7B	95	42.18	a.4.5.17	16152
1ubkL	534	43.90	e.18.1.1	88422
1zu1A	127	44.01		
2p09A	78	47.83		
1c8cA	64	48.31	b.34.13.1	59084
2af4C	333	48.96	c.77.1.5	126656
1uwzA	136	49.18	c.97.1.1	108081
3b8fA	142	50.15		
1jtkA	136	50.27	c.97.1.1	71862
1rp4A	389	50.82	a.227.1.1	105027
1y3jA	77	51.17		
2qeuA	141	52.67		
2sasA	185	53.36	a.39.1.5	17258
1xyiA	66	54.21		
1d4vA	117	54.39	g.24.1.1,g.24.1.1,g.24.1.1	44915,44916,44917
2agaA	190	54.61		
2jwhA	48	55.30		
1fe0A	68	55.92	d.58.17.1	39345
2i3sB	36	56.90		
1n62A	166	58.17	a.56.1.1,d.15.4.2	80090,80091
1vq2A	193	58.41	c.97.1.2	114004
1v1dA	31	58.63	j.6.1.1	119817
2d58A	107	59.02		
1r5tA	142	59.17	c.97.1.1	104812
2oy9A	98	60.42		
1a5t	334	62.75		
1azpA	66	63.10	b.34.13.1	37467
1tdpA	111	63.49	a.29.8.1	106781
1dxsA	80	65.21	a.60.1.2	17944
1a99A	344	66.08	c.94.1.1	35812
1wy9A	147	66.36		
1njgA	250	67.43	c.37.1.20	85785
1uw1A	80	68.20	k.42.1.1	100069
1oohA	126	73.30	a.39.2.1	93383
2h21A	440	73.30	a.166.1.1,b.85.7.3	135976,135977
2yrmA	43	73.33		
1a5tA	334	74.24	a.80.1.1,c.37.1.20	18450,32423
2fr5A	146	74.67	c.97.1.1	133965
1tr0A	108	74.69	d.58.4.4	107261
1qhoA	686	76.29	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21844,22513,27751,28738
2prrA	197	80.09		
1ykhA	108	80.35	a.252.1.2	123518
1e8gA	560	81.33	d.58.32.1,d.145.1.1	39455,41718
2dx8A	67	82.30		
2ezhA	75	83.04	a.4.1.2	16029
1gu9A	177	84.86	a.152.1.1	65540
1pi1A	185	84.97	a.29.7.1	94699
2iazA	113	89.16