# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 4.17e-14 a.24.15.1 87264 1jr8A 117 9.53e-14 a.24.15.1 67115 2aj0A 71 2.709 1wkqA 164 4.588 c.97.1.2 109393 1cttA 294 6.741 c.97.1.1,c.97.1.1 36022,36023 2nytA 190 7.631 1wn5A 130 7.717 c.97.1.1 121082 1ctt 294 10.40 1cc8A 73 10.56 d.58.17.1 39343 2h8lA 252 12.83 2q3pA 112 13.49 d.58.4.4 139798 2z3hA 130 14.42 1z3aA 168 15.22 c.97.1.2 124396 2nx8A 179 15.39 2a8nA 144 15.58 c.97.1.2 126408 1mwyA 73 20.72 d.58.17.1 79616 2b3jA 159 22.89 c.97.1.2 127787 1tiyA 164 24.10 c.97.1.2 107012 1va6A 518 24.58 d.128.1.4 113598 1p6oA 161 26.82 c.97.1.2 94185 1vkeA 133 28.02 a.152.1.2 108650 2sasA 185 28.57 a.39.1.5 17258 2hvwA 184 28.69 1ovxA 67 29.28 g.39.1.11 93622 1y3jA 77 30.25 1j55A 95 30.55 a.39.1.2 77078 2g84A 197 32.93 c.97.1.2 134766 2fqhA 109 34.75 2ahmA 88 35.52 a.8.9.1 126760 2vlgA 111 37.65 1vq2A 193 38.92 c.97.1.2 114004 2af4C 333 39.84 c.77.1.5 126656 2ds5A 51 42.92 g.39.1.11 131681 2hjnA 236 43.60 2qeuA 141 43.87 1c8cA 64 44.28 b.34.13.1 59084 1uwzA 136 44.38 c.97.1.1 108081 1fe0A 68 44.81 d.58.17.1 39345 2q01A 497 46.06 1rp4A 389 46.43 a.227.1.1 105027 2jwhA 48 46.88 1jtkA 136 47.28 c.97.1.1 71862 1zu1A 127 48.20 2eppA 66 51.77 1cf7B 95 52.13 a.4.5.17 16152 1d4vA 117 52.59 g.24.1.1,g.24.1.1,g.24.1.1 44915,44916,44917 1v1dA 31 52.87 j.6.1.1 119817 1xyiA 66 53.56 3b8fA 142 54.68 2i3sB 36 54.95 1ubkL 534 56.58 e.18.1.1 88422 1a99A 344 56.63 c.94.1.1 35812 1njgA 250 58.34 c.37.1.20 85785 2oy9A 98 60.94 1azpA 66 63.28 b.34.13.1 37467 1r5tA 142 64.77 c.97.1.1 104812 2d58A 107 66.39 1wwrA 171 66.99 c.97.1.2 121366 3beyA 96 67.18 2h21A 440 68.86 a.166.1.1,b.85.7.3 135976,135977 1dxsA 80 69.69 a.60.1.2 17944 1oohA 126 70.05 a.39.2.1 93383 1osdA 72 70.47 d.58.17.1 104022 2fr5A 146 70.58 c.97.1.1 133965 1avsA 90 71.30 a.39.1.5 17226 1vlbA 907 71.62 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1tr0A 108 72.01 d.58.4.4 107261 2p09A 78 72.16 1gu9A 177 72.22 a.152.1.1 65540 2prrA 197 73.44 1a5tA 334 73.62 a.80.1.1,c.37.1.20 18450,32423 1gpuA 680 74.66 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1wy9A 147 75.41 1n62A 166 78.41 a.56.1.1,d.15.4.2 80090,80091 1qhoA 686 79.01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1ykhA 108 79.88 a.252.1.2 123518 2agaA 190 80.06 2ezhA 75 81.25 a.4.1.2 16029 1ppt 36 84.55 1e8gA 560 86.58 d.58.32.1,d.145.1.1 39455,41718 1wlzA 105 87.18 a.39.1.7 121024 1lw1A 177 89.57 a.152.1.1 74290