# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	8.05e-17	a.24.15.1	87264
1jr8A	117	1.84e-16	a.24.15.1	67115
2aj0A	71	1.455		
2nytA	190	3.474		
1wn5A	130	4.178	c.97.1.1	121082
2b3jA	159	5.741	c.97.1.2	127787
1p6oA	161	6.016	c.97.1.2	94185
1cc8A	73	6.187	d.58.17.1	39343
2z3hA	130	6.963		
1z3aA	168	7.484	c.97.1.2	124396
1wkqA	164	7.725	c.97.1.2	109393
2g84A	197	8.085	c.97.1.2	134766
2h8lA	252	9.082		
2nx8A	179	9.316		
1vq2A	193	9.869	c.97.1.2	114004
1r5tA	142	10.40	c.97.1.1	104812
2q3pA	112	10.80	d.58.4.4	139798
1uwzA	136	11.30	c.97.1.1	108081
1gu9A	177	12.15	a.152.1.1	65540
2af4C	333	12.99	c.77.1.5	126656
1jtkA	136	13.27	c.97.1.1	71862
1wwrA	171	15.01	c.97.1.2	121366
1fe0A	68	17.18	d.58.17.1	39345
2hvwA	184	19.01		
2a8nA	144	19.54	c.97.1.2	126408
1lw1A	177	20.28	a.152.1.1	74290
2dsyA	87	20.41		
2ezhA	75	21.05	a.4.1.2	16029
1e8gA	560	21.11	d.58.32.1,d.145.1.1	39455,41718
2nllB	103	23.05	g.39.1.2	45115
1itg	166	25.20		
1ovnA	248	27.40	a.71.1.1,c.47.1.7	93602,93603
1cttA	294	27.79	c.97.1.1,c.97.1.1	36022,36023
1v32A	101	28.99	a.42.1.1	100277
2fr5A	146	29.39	c.97.1.1	133965
1xvqA	175	29.88	c.47.1.10	116094
1iioA	84	30.92	a.39.4.1	66150
1mwyA	73	32.92	d.58.17.1	79616
2sasA	185	37.35	a.39.1.5	17258
1dszB	85	38.06	g.39.1.2	45108
1osdA	72	38.22	d.58.17.1	104022
1kp8A	547	39.28	a.129.1.1,c.8.5.1,d.56.1.1	84414,84415,84416
1nhyA	219	40.51	a.45.1.1,c.47.1.5	80520,80521
3b8fA	142	41.40		
2ebdA	309	41.83		
1tr0A	108	43.22	d.58.4.4	107261
1tdpA	111	44.32	a.29.8.1	106781
1ctt	294	45.40		
1tiyA	164	46.02	c.97.1.2	107012
1faoA	126	48.70	b.55.1.1	26974
1y2tA	142	56.72	b.97.1.2	116407
1y3jA	77	57.33		
2gcfA	73	57.35		
1knyA	253	60.52	a.24.16.1,d.218.1.1	75896,75897
1bl3A	160	61.08	c.55.3.2	33655
3b8mA	280	61.20		
1dszA	86	62.46	g.39.1.2	45129
1c8cA	64	63.55	b.34.13.1	59084
2cx4A	164	64.57	c.47.1.10	130973
1i5gA	144	65.36	c.47.1.10	61784
2hanB	119	67.72	g.39.1.2	136292
1qxhA	167	76.02	c.47.1.10	96528
1xccA	220	78.47	c.47.1.10	115113
1g8yA	279	78.55	c.37.1.11	32302
2ahmA	88	78.88	a.8.9.1	126760
1izoA	417	79.28	a.104.1.1	83851
1yjrA	75	82.49		
2bijA	305	84.04		
1azpA	66	84.43	b.34.13.1	37467
1ldjB	90	85.20	g.44.1.1	73850
1oruA	195	88.23	b.58.1.2	93464
2nn4A	72	89.94