# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 1.24e-13 a.24.15.1 87264 1jr8A 117 3.05e-13 a.24.15.1 67115 2aj0A 71 0.9777 1wn5A 130 1.964 c.97.1.1 121082 2nytA 190 2.000 2sasA 185 3.023 a.39.1.5 17258 1wkqA 164 3.283 c.97.1.2 109393 1cttA 294 4.063 c.97.1.1,c.97.1.1 36022,36023 2h8lA 252 4.215 1ctt 294 4.716 2z3hA 130 6.018 1cc8A 73 6.227 d.58.17.1 39343 2b3jA 159 6.976 c.97.1.2 127787 2fqhA 109 7.196 1z3aA 168 7.205 c.97.1.2 124396 2a8nA 144 9.004 c.97.1.2 126408 2nx8A 179 9.072 1p6oA 161 9.153 c.97.1.2 94185 1va6A 518 9.374 d.128.1.4 113598 2q01A 497 9.872 2ds5A 51 10.17 g.39.1.11 131681 2eppA 66 10.82 1ovxA 67 11.00 g.39.1.11 93622 2p09A 78 11.46 1zu1A 127 11.59 1wwrA 171 13.48 c.97.1.2 121366 2ahmA 88 14.13 a.8.9.1 126760 1r5tA 142 14.22 c.97.1.1 104812 1uwzA 136 14.24 c.97.1.1 108081 1jtkA 136 15.34 c.97.1.1 71862 2agaA 190 15.38 2vlgA 111 16.26 1mwyA 73 16.87 d.58.17.1 79616 2g84A 197 17.53 c.97.1.2 134766 2fiyA 309 17.65 e.59.1.1 133540 1uw1A 80 17.81 k.42.1.1 100069 1c8cA 64 18.34 b.34.13.1 59084 1y3jA 77 18.38 2dx8A 67 18.68 1a99A 344 19.89 c.94.1.1 35812 2yrmA 43 19.89 3b8fA 142 20.55 1smbA 154 20.92 d.111.1.1 105756 2hvwA 184 21.13 1rp4A 389 21.21 a.227.1.1 105027 1brvA 32 21.49 j.33.1.1 46235 2fr5A 146 21.99 c.97.1.1 133965 1rwjA 82 22.39 a.138.1.1 105114 1znfA 25 22.55 g.37.1.1 45036 1j55A 95 22.59 a.39.1.2 77078 2hjnA 236 22.73 1x9zA 188 22.86 d.292.1.1 115019 1azpA 66 23.72 b.34.13.1 37467 2f2lA 167 25.14 d.118.1.1 132843 1nhyA 219 25.80 a.45.1.1,c.47.1.5 80520,80521 1xyiA 66 25.92 2oy9A 98 26.69 2q3pA 112 27.22 d.58.4.4 139798 2ezhA 75 27.45 a.4.1.2 16029 2iazA 113 27.55 1vq2A 193 27.66 c.97.1.2 114004 1qnxA 209 28.42 d.111.1.1 40914 2i3sB 36 29.03 1fe0A 68 29.15 d.58.17.1 39345 1ykhA 108 29.18 a.252.1.2 123518 1wlzA 105 29.48 a.39.1.7 121024 1ubkL 534 29.98 e.18.1.1 88422 2d58A 107 30.04 2jwhA 48 31.38 2heuA 401 32.06 1d4vA 117 32.24 g.24.1.1,g.24.1.1,g.24.1.1 44915,44916,44917 1njqA 39 34.60 g.37.1.3 85822 1cf7B 95 34.89 a.4.5.17 16152 2elxA 35 35.32 1ae7A 119 35.88 a.133.1.2 19553 1dlcA 584 37.02 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1osdA 72 37.11 d.58.17.1 104022 1wilA 89 37.32 g.50.1.3 114676 1faoA 126 37.51 b.55.1.1 26974 2fipA 115 40.74 2qzcA 214 43.29 1anf 370 44.08 1dxsA 80 44.54 a.60.1.2 17944 2c2xA 281 44.58 2eloA 37 45.87 3c8yA 574 46.59 1n5uA 585 46.70 a.126.1.1,a.126.1.1,a.126.1.1 85339,85340,85341 1e7aA 585 46.71 a.126.1.1,a.126.1.1,a.126.1.1 19360,19361,19362 2e01A 457 47.18 1v1dA 31 47.21 j.6.1.1 119817 2f2lX 167 47.72 d.118.1.1 132844 1u53A 196 48.80 1ldjB 90 48.81 g.44.1.1 73850 1tiyA 164 49.80 c.97.1.2 107012 1gpuA 680 49.81 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 4mbp 370 51.21 1wy9A 147 51.43 2j9wA 102 51.60 2f6hX 419 51.64 1mhqA 148 51.64 a.118.9.2 84973 2g3kA 94 51.82 a.24.28.1 134562 2pqxA 245 53.26 3craA 265 54.21 2f5gA 133 54.99 d.58.57.1 132991 1a5tA 334 55.06 a.80.1.1,c.37.1.20 18450,32423 1kz7A 353 56.52 a.87.1.1,b.55.1.1 73333,73334 1d2vC 466 56.70 2bijA 305 57.38 2dxnA 274 58.45 1wrdA 103 59.78 2ebdA 309 59.86 1gu9A 177 61.31 a.152.1.1 65540 1foeA 377 61.37 a.87.1.1,b.55.1.1 18517,26969 2jrpA 81 61.49 1sxrA 183 61.93 d.118.1.1 106101 1jvrA 137 62.29 a.61.1.2 18132 2h21A 440 62.93 a.166.1.1,b.85.7.3 135976,135977 1zejA 293 64.18 2dsyA 87 64.56 2aalA 131 66.02 d.80.1.6 126483 2pu9A 110 66.04 1s1hN 36 66.85 i.1.1.1 105166 1g2fC 90 67.17 k.12.1.1 60222 2dfkA 402 68.78 1bkcE 256 69.26 d.92.1.10 40333 1gyxA 76 69.48 d.80.1.1 76387 2hi7B 176 69.82 1u8bA 133 69.89 2pd2A 108 69.91 1oohA 126 70.66 a.39.2.1 93383 1vf6C 72 71.57 a.194.1.1 100602 1ei7A 158 71.79 a.24.5.1 16584 2ouiA 360 73.68 1v74B 87 73.70 a.24.20.1 100443 2q2gA 180 73.97 1wpkA 146 74.55 2js5A 71 74.58 2i13A 190 74.62 k.12.1.1 136964 1pi1A 185 74.68 a.29.7.1 94699 1a1hA 90 74.71 g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1bi6H 41 75.10 g.3.12.1 44340 1a1gA 90 75.65 g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1izoA 417 78.57 a.104.1.1 83851 1ecmA 109 79.75 a.130.1.1 19492 2hdpA 63 80.26 1avsA 90 81.17 a.39.1.5 17226 1lu4A 136 81.80 c.47.1.10 91124 1le6A 123 82.67 a.133.1.2 73862 2gloA 59 83.19 1zaaC 87 83.94 g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1d66A 66 84.13 g.38.1.1,h.1.3.1 45076,45510 2czrA 226 85.75 1ji7A 89 86.53 a.60.1.1 71682 2jm1A 141 87.27 2quqA 562 87.36 2beqD 48 88.03 1nowA 507 88.63 c.1.8.6,d.92.2.1 85936,85937