# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 5.92e-22 a.24.15.1 87264 1jr8A 117 3.22e-21 a.24.15.1 67115 2a8nA 144 2.387 c.97.1.2 126408 1cttA 294 2.421 c.97.1.1,c.97.1.1 36022,36023 2aj0A 71 2.533 1ubkL 534 2.655 e.18.1.1 88422 1ctt 294 3.004 2in1A 175 3.435 d.20.1.4 137521 1ew2A 513 3.944 c.76.1.1 59525 2vgaA 207 5.714 2fqhA 109 6.297 2nytA 190 6.823 1cc8A 73 8.307 d.58.17.1 39343 2z3hA 130 10.01 1wkqA 164 10.74 c.97.1.2 109393 1fjmA 330 11.54 d.159.1.3 42082 2q2gA 180 12.88 1d8wA 426 13.13 c.1.15.2 29394 1gpuA 680 14.11 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 2ch5A 347 14.45 c.55.1.5,c.55.1.5 130453,130454 5eauA 548 16.37 a.102.4.1,a.128.1.3 18851,19443 1avsA 90 17.78 a.39.1.5 17226 1jk0A 419 17.87 a.25.1.2 63142 1gowA 489 17.87 c.1.8.4 28981 1z3aA 168 18.38 c.97.1.2 124396 1mhyD 521 23.54 a.25.1.2 16780 2nx8A 179 24.31 1a2xA 159 24.55 a.39.1.5 17251 1qtwA 285 24.64 c.1.15.1 29392 1zowA 313 25.58 1k9uA 78 25.75 a.39.1.10 84348 5eau 548 26.48 2d1cA 496 26.72 1p6oA 161 27.77 c.97.1.2 94185 2bg9E 370 27.88 2i0kA 561 29.06 2gv5A 161 31.02 2c9eA 327 31.42 1xwl 580 31.69 1e79G 272 31.96 c.49.2.1 33158 1j55A 95 33.51 a.39.1.2 77078 1k3pA 426 33.57 a.103.1.1 77237 2hvwA 184 33.64 1cf7B 95 34.17 a.4.5.17 16152 1ldjB 90 34.54 g.44.1.1 73850 2pnkA 428 34.91 1y8qA 346 37.67 2hjsA 340 38.53 c.2.1.3,d.81.1.1 136547,136548 2gsaA 432 39.61 c.67.1.4 34446 2qr3A 140 40.50 2p09A 78 40.78 1ua7A 422 41.03 b.71.1.1,c.1.8.1 107759,107760 1xviA 275 41.08 c.108.1.10 116088 2eppA 66 43.23 2ahmA 88 45.89 a.8.9.1 126760 1ycdA 243 46.40 2d58A 107 46.53 2j89A 261 46.67 2g3vA 208 49.52 2hpuA 175 49.94 3bg1B 442 50.35 2fiyA 309 50.91 e.59.1.1 133540 2af4C 333 51.55 c.77.1.5 126656 1lu4A 136 54.32 c.47.1.10 91124 1ovxA 67 54.43 g.39.1.11 93622 2dfkA 402 55.73 2ds5A 51 55.99 g.39.1.11 131681 1d8cA 723 56.12 c.1.13.1 29325 1r5tA 142 57.31 c.97.1.1 104812 1uwzA 136 57.96 c.97.1.1 108081 1g0dA 695 59.51 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 2g84A 197 60.73 c.97.1.2 134766 1tuhA 156 62.43 d.17.4.11 107345 2jamA 304 62.96 1j3gA 187 64.42 d.118.1.1 77075 1jtkA 136 64.64 c.97.1.1 71862 2v7kA 361 64.67 2qm8A 337 65.98 1t3cA 421 66.21 d.92.1.7 106343 1gw5S 142 66.94 d.110.4.2 70633 2vlgA 111 68.60 1xvwA 160 69.16 c.47.1.10 122387 1a99A 344 69.96 c.94.1.1 35812 2agaA 190 71.60 2prrA 197 72.66 2eqkA 85 74.68 1uw1A 80 75.25 k.42.1.1 100069 2heuA 401 75.36 2a4dA 160 78.36 d.20.1.1 126152 2uuqA 414 79.09 2hjnA 236 80.12 1ei6A 406 81.15 c.76.1.4 90443 1xvlA 321 82.33 c.92.2.2 122380 1mwyA 73 82.81 d.58.17.1 79616 1d2vC 466 84.54 1amk 251 86.04 2oatA 439 88.41 c.67.1.4 34452 2bl0C 142 89.37 1dfaA 454 89.92 b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576