# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 8.86e-14 a.24.15.1 87264 1jr8A 117 2.19e-13 a.24.15.1 67115 2aj0A 71 1.695 1wn5A 130 3.473 c.97.1.1 121082 2nytA 190 3.739 1wkqA 164 4.684 c.97.1.2 109393 1cttA 294 4.951 c.97.1.1,c.97.1.1 36022,36023 1ctt 294 6.599 2h8lA 252 6.836 1z3aA 168 7.839 c.97.1.2 124396 2b3jA 159 8.877 c.97.1.2 127787 1cc8A 73 9.607 d.58.17.1 39343 2sasA 185 9.790 a.39.1.5 17258 2nx8A 179 9.886 2a8nA 144 9.945 c.97.1.2 126408 2z3hA 130 10.47 2q3pA 112 12.01 d.58.4.4 139798 1p6oA 161 13.69 c.97.1.2 94185 2fqhA 109 15.71 2g84A 197 17.97 c.97.1.2 134766 1wwrA 171 20.86 c.97.1.2 121366 2eppA 66 21.83 2ds5A 51 22.45 g.39.1.11 131681 2ahmA 88 22.66 a.8.9.1 126760 2q01A 497 23.37 1va6A 518 24.11 d.128.1.4 113598 2vlgA 111 24.88 1uwzA 136 25.88 c.97.1.1 108081 2hvwA 184 25.99 1r5tA 142 26.96 c.97.1.1 104812 1jtkA 136 27.95 c.97.1.1 71862 1ovxA 67 29.23 g.39.1.11 93622 2p09A 78 30.68 1zu1A 127 31.75 1mwyA 73 32.21 d.58.17.1 79616 2agaA 190 32.94 2dx8A 67 33.19 1vq2A 193 33.62 c.97.1.2 114004 1a99A 344 33.81 c.94.1.1 35812 1y3jA 77 34.17 2iazA 113 36.00 1c8cA 64 37.31 b.34.13.1 59084 3b8fA 142 37.76 2fr5A 146 39.58 c.97.1.1 133965 1fe0A 68 41.27 d.58.17.1 39345 1tr0A 108 41.31 d.58.4.4 107261 2jwhA 48 45.55 2hjnA 236 46.30 1azpA 66 46.77 b.34.13.1 37467 2fiyA 309 47.61 e.59.1.1 133540 2yrmA 43 47.61 1brvA 32 47.88 j.33.1.1 46235 1uw1A 80 51.79 k.42.1.1 100069 2oy9A 98 52.09 2ezhA 75 53.83 a.4.1.2 16029 1wilA 89 54.58 g.50.1.3 114676 1d4vA 117 55.15 g.24.1.1,g.24.1.1,g.24.1.1 44915,44916,44917 3c8yA 574 57.05 1xyiA 66 57.71 1rp4A 389 58.42 a.227.1.1 105027 1znfA 25 59.07 g.37.1.1 45036 1cf7B 95 60.88 a.4.5.17 16152 1ae7A 119 62.21 a.133.1.2 19553 1gpuA 680 62.68 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1osdA 72 63.82 d.58.17.1 104022 1x9zA 188 63.87 d.292.1.1 115019 2f2lA 167 63.88 d.118.1.1 132843 2elxA 35 64.55 1anf 370 64.96 1v1dA 31 68.03 j.6.1.1 119817 1faoA 126 68.16 b.55.1.1 26974 1nhyA 219 68.34 a.45.1.1,c.47.1.5 80520,80521 2g3kA 94 69.76 a.24.28.1 134562 2c2xA 281 70.24 2pqxA 245 70.89 4mbp 370 71.16 1njqA 39 74.04 g.37.1.3 85822 1e8gA 560 75.86 d.58.32.1,d.145.1.1 39455,41718 1gyxA 76 77.81 d.80.1.1 76387 1tiyA 164 78.00 c.97.1.2 107012 1rwjA 82 81.28 a.138.1.1 105114 2i3sB 36 81.85 1ykhA 108 82.66 a.252.1.2 123518 1zejA 293 84.34 1smbA 154 85.47 d.111.1.1 105756 1j55A 95 87.06 a.39.1.2 77078 1ubkL 534 89.98 e.18.1.1 88422