# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	4.80e-15	a.24.15.1	87264
1jr8A	117	1.17e-14	a.24.15.1	67115
2aj0A	71	3.268		
1wn5A	130	5.376	c.97.1.1	121082
1wkqA	164	6.269	c.97.1.2	109393
1cttA	294	7.936	c.97.1.1,c.97.1.1	36022,36023
2nytA	190	10.02		
2h8lA	252	11.80		
1ctt	294	12.45		
1cc8A	73	12.70	d.58.17.1	39343
1z3aA	168	14.08	c.97.1.2	124396
2z3hA	130	16.15		
2a8nA	144	17.80	c.97.1.2	126408
1zu1A	127	18.29		
1ovxA	67	18.67	g.39.1.11	93622
2nx8A	179	20.17		
2b3jA	159	21.01	c.97.1.2	127787
2g84A	197	21.23	c.97.1.2	134766
2ds5A	51	21.80	g.39.1.11	131681
2agaA	190	22.65		
2fqhA	109	23.81		
2vlgA	111	23.90		
1j55A	95	26.97	a.39.1.2	77078
1p6oA	161	27.29	c.97.1.2	94185
2q3pA	112	28.52	d.58.4.4	139798
2eppA	66	30.88		
1uwzA	136	32.71	c.97.1.1	108081
1jtkA	136	36.01	c.97.1.1	71862
1va6A	518	36.16	d.128.1.4	113598
1r5tA	142	39.27	c.97.1.1	104812
1dxsA	80	40.92	a.60.1.2	17944
2jwhA	48	41.39		
3b8fA	142	44.18		
1kv4A	42	45.81	j.4.1.3	73051
2hjnA	236	46.26		
1mwyA	73	46.70	d.58.17.1	79616
2pqxA	245	49.11		
2yrmA	43	49.53		
2hvwA	184	53.33		
1d4vA	117	54.90	g.24.1.1,g.24.1.1,g.24.1.1	44915,44916,44917
1c8cA	64	54.93	b.34.13.1	59084
2dx8A	67	54.97		
2fr5A	146	54.99	c.97.1.1	133965
2ahmA	88	55.56	a.8.9.1	126760
1jvrA	137	55.57	a.61.1.2	18132
2p09A	78	57.36		
1fe0A	68	58.96	d.58.17.1	39345
1a99A	344	60.87	c.94.1.1	35812
1tdpA	111	61.12	a.29.8.1	106781
1cf7B	95	62.09	a.4.5.17	16152
1ubkL	534	62.11	e.18.1.1	88422
1gpuA	680	64.94	c.36.1.10,c.36.1.6,c.48.1.1	65454,65455,65456
1rlr	761	65.14		
1azpA	66	67.49	b.34.13.1	37467
2iazA	113	67.63		
2i3sB	36	69.64		
2oy9A	98	69.97		
1znfA	25	71.39	g.37.1.1	45036
2q01A	497	71.66		
1ykhA	108	73.57	a.252.1.2	123518
2h21A	440	75.21	a.166.1.1,b.85.7.3	135976,135977
1tiyA	164	75.23	c.97.1.2	107012
1xyiA	66	77.04		
1o1xA	155	78.12	c.121.1.1	86553
1vq2A	193	79.91	c.97.1.2	114004
1brvA	32	84.55	j.33.1.1	46235
1y3jA	77	84.62		
1rp4A	389	86.72	a.227.1.1	105027
2b5eA	504	87.78	c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2	127888,127889,127890,127891