# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 1.59e-15 a.24.15.1 87264 1jr8A 117 3.53e-15 a.24.15.1 67115 2aj0A 71 1.742 2nytA 190 2.435 1wn5A 130 2.952 c.97.1.1 121082 1cttA 294 3.930 c.97.1.1,c.97.1.1 36022,36023 1wkqA 164 4.017 c.97.1.2 109393 2h8lA 252 6.046 1ctt 294 6.329 2z3hA 130 6.600 1cc8A 73 6.837 d.58.17.1 39343 1z3aA 168 7.512 c.97.1.2 124396 2a8nA 144 8.339 c.97.1.2 126408 2nx8A 179 8.845 2b3jA 159 10.29 c.97.1.2 127787 1ovxA 67 10.91 g.39.1.11 93622 1ubkL 534 10.92 e.18.1.1 88422 2g84A 197 11.47 c.97.1.2 134766 2ds5A 51 13.08 g.39.1.11 131681 1p6oA 161 13.11 c.97.1.2 94185 1va6A 518 14.36 d.128.1.4 113598 1jvrA 137 15.21 a.61.1.2 18132 1r5tA 142 15.76 c.97.1.1 104812 1c8cA 64 15.96 b.34.13.1 59084 1uwzA 136 16.62 c.97.1.1 108081 2vlgA 111 16.93 2agaA 190 16.98 2eppA 66 18.67 1jtkA 136 18.81 c.97.1.1 71862 2hjnA 236 19.65 2jwhA 48 20.47 2fqhA 109 21.26 1a99A 344 21.44 c.94.1.1 35812 2p09A 78 21.73 2dx8A 67 22.00 3b8fA 142 22.13 2q3pA 112 22.76 d.58.4.4 139798 1dxsA 80 22.81 a.60.1.2 17944 2h21A 440 22.88 a.166.1.1,b.85.7.3 135976,135977 2fiyA 309 23.07 e.59.1.1 133540 2hvwA 184 24.46 1kv4A 42 25.58 j.4.1.3 73051 1azpA 66 25.63 b.34.13.1 37467 1xyiA 66 25.70 1zu1A 127 26.34 1uw1A 80 30.00 k.42.1.1 100069 2fr5A 146 30.59 c.97.1.1 133965 1fe0A 68 31.03 d.58.17.1 39345 2q01A 497 32.35 1rlr 761 33.42 1vq2A 193 35.28 c.97.1.2 114004 1wwrA 171 35.54 c.97.1.2 121366 1o1xA 155 38.04 c.121.1.1 86553 1rwjA 82 38.20 a.138.1.1 105114 2pqxA 245 38.54 1brvA 32 38.61 j.33.1.1 46235 1rp4A 389 39.46 a.227.1.1 105027 2ouiA 360 43.04 1tiyA 164 45.59 c.97.1.2 107012 1dq3A 454 45.79 b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1gpuA 680 46.47 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1e3dB 542 46.75 e.18.1.1 59189 1j55A 95 48.19 a.39.1.2 77078 2ahmA 88 48.25 a.8.9.1 126760 1d4vA 117 49.75 g.24.1.1,g.24.1.1,g.24.1.1 44915,44916,44917 2yrmA 43 50.00 2bijA 305 50.53 2i3sB 36 50.67 1db1A 259 51.04 a.123.1.1 19329 1ykhA 108 51.05 a.252.1.2 123518 1mwyA 73 52.18 d.58.17.1 79616 2oy9A 98 52.24 2fccA 137 52.39 a.18.1.1 133264 1lu4A 136 52.52 c.47.1.10 91124 2sasA 185 52.60 a.39.1.5 17258 1h2rL 534 53.67 e.18.1.1 43298 2j9wA 102 56.87 1v1dA 31 61.16 j.6.1.1 119817 2rfbA 343 61.89 2pnkA 428 62.54 1y3jA 77 62.99 2iazA 113 63.37 1znfA 25 63.72 g.37.1.1 45036 1pot 325 66.34 1smbA 154 69.46 d.111.1.1 105756 2f2lA 167 71.03 d.118.1.1 132843 2af4C 333 71.03 c.77.1.5 126656 1x3zA 335 72.59 d.3.1.4 121673 1wilA 89 72.64 g.50.1.3 114676 1hn6A 110 73.06 g.61.1.1 76721 1x9zA 188 75.56 d.292.1.1 115019 1skoA 143 75.64 d.110.7.1 105676 1osdA 72 76.42 d.58.17.1 104022 1faoA 126 78.65 b.55.1.1 26974 1wlzA 105 80.39 a.39.1.7 121024 1uslA 170 80.57 c.121.1.1 99871 2heuA 401 81.48 2aalA 131 82.11 d.80.1.6 126483 1wuiL 534 82.24 e.18.1.1 121289 2hi7B 176 86.21 2pd2A 108 87.87 1vlbA 907 87.99 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1tr0A 108 88.76 d.58.4.4 107261 1e79G 272 89.95 c.49.2.1 33158