# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 1.69e-14 a.24.15.1 87264 1jr8A 117 3.78e-14 a.24.15.1 67115 2aj0A 71 1.709 1wn5A 130 4.353 c.97.1.1 121082 2nytA 190 5.280 1wkqA 164 5.778 c.97.1.2 109393 1cttA 294 6.258 c.97.1.1,c.97.1.1 36022,36023 1cc8A 73 8.461 d.58.17.1 39343 1ctt 294 8.822 2h8lA 252 12.58 1z3aA 168 12.76 c.97.1.2 124396 2a8nA 144 13.50 c.97.1.2 126408 1ovxA 67 13.61 g.39.1.11 93622 2z3hA 130 14.02 2b3jA 159 14.47 c.97.1.2 127787 2nx8A 179 14.61 1c8cA 64 16.09 b.34.13.1 59084 1va6A 518 16.36 d.128.1.4 113598 2q3pA 112 18.70 d.58.4.4 139798 2fqhA 109 18.88 2ds5A 51 19.85 g.39.1.11 131681 1dxsA 80 21.81 a.60.1.2 17944 2eppA 66 21.99 1azpA 66 22.20 b.34.13.1 37467 1xyiA 66 22.95 2agaA 190 23.99 2fiyA 309 24.22 e.59.1.1 133540 1rlr 761 24.88 2sasA 185 25.26 a.39.1.5 17258 1y3jA 77 25.34 2hjnA 236 25.54 1uwzA 136 27.36 c.97.1.1 108081 1zu1A 127 27.76 2q01A 497 27.90 2vlgA 111 28.16 1j55A 95 29.14 a.39.1.2 77078 2h21A 440 29.29 a.166.1.1,b.85.7.3 135976,135977 1p6oA 161 29.55 c.97.1.2 94185 1r5tA 142 30.55 c.97.1.1 104812 1fe0A 68 30.90 d.58.17.1 39345 1jtkA 136 31.78 c.97.1.1 71862 2jwhA 48 32.88 2g84A 197 33.00 c.97.1.2 134766 1mwyA 73 33.72 d.58.17.1 79616 2hvwA 184 35.91 2oy9A 98 36.07 1a99A 344 36.43 c.94.1.1 35812 2fr5A 146 36.53 c.97.1.1 133965 1rp4A 389 37.16 a.227.1.1 105027 2p09A 78 37.68 3b8fA 142 40.74 1cf7B 95 41.58 a.4.5.17 16152 1kv4A 42 41.98 j.4.1.3 73051 2dx8A 67 42.63 1ubkL 534 43.52 e.18.1.1 88422 2ahmA 88 43.63 a.8.9.1 126760 1tdpA 111 54.83 a.29.8.1 106781 1tiyA 164 55.68 c.97.1.2 107012 2yrmA 43 55.71 1jvrA 137 56.24 a.61.1.2 18132 1vq2A 193 56.41 c.97.1.2 114004 1ykhA 108 56.94 a.252.1.2 123518 1uw1A 80 58.48 k.42.1.1 100069 2pqxA 245 59.48 2b5eA 504 59.88 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 2i3sB 36 61.12 1d4vA 117 63.63 g.24.1.1,g.24.1.1,g.24.1.1 44915,44916,44917 2af4C 333 64.26 c.77.1.5 126656 1y0nA 78 68.37 d.291.1.1 116305 2iazA 113 68.96 1osdA 72 70.92 d.58.17.1 104022 1rwjA 82 71.33 a.138.1.1 105114 1wwrA 171 74.39 c.97.1.2 121366 1gu9A 177 74.87 a.152.1.1 65540 1smbA 154 77.94 d.111.1.1 105756 2bijA 305 78.96 1brvA 32 78.98 j.33.1.1 46235 2ebdA 309 81.14 2ia4A 287 81.38 2f2lA 167 85.41 d.118.1.1 132843 2pd2A 108 85.88 2ouiA 360 86.36 1nowA 507 87.80 c.1.8.6,d.92.2.1 85936,85937 2ezhA 75 89.00 a.4.1.2 16029