# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oqcA	125	1.28e-15	a.24.15.1	87264
1jr8A	117	4.99e-15	a.24.15.1	67115
2aj0A	71	4.524		
1wn5A	130	6.365	c.97.1.1	121082
2fqhA	109	7.605		
2h8lA	252	10.37		
1wkqA	164	10.75	c.97.1.2	109393
1r5tA	142	13.59	c.97.1.1	104812
1jtkA	136	14.85	c.97.1.1	71862
1uwzA	136	17.68	c.97.1.1	108081
1cc8A	73	17.88	d.58.17.1	39343
1n28A	124	19.11	a.133.1.2	91550
1vq2A	193	25.35	c.97.1.2	114004
2nytA	190	31.81		
2cdcA	366	32.57		
1tdpA	111	33.97	a.29.8.1	106781
1mwyA	73	35.21	d.58.17.1	79616
2obiA	183	36.12		
2b3jA	159	38.07	c.97.1.2	127787
1kvoA	124	38.28	a.133.1.2	19564
2cx4A	164	41.43	c.47.1.10	130973
2fr5A	146	42.66	c.97.1.1	133965
1p6oA	161	43.21	c.97.1.2	94185
1z5yE	149	44.96	c.47.1.10	124498
2z3hA	130	45.20		
1le6A	123	45.56	a.133.1.2	73862
1ae7A	119	45.62	a.133.1.2	19553
1i5gA	144	48.01	c.47.1.10	61784
2p5qA	170	48.35		
1gu9A	177	49.29	a.152.1.1	65540
2nmxA	260	49.45	b.74.1.1	138382
2a8nA	144	49.80	c.97.1.2	126408
1xvwA	160	50.99	c.47.1.10	122387
2ia4A	287	51.08		
1c8cA	64	53.20	b.34.13.1	59084
1cttA	294	54.00	c.97.1.1,c.97.1.1	36022,36023
1f0yA	302	54.52	a.100.1.3,c.2.1.6	18793,30197
2odpA	509	58.48		
1st9A	143	59.00	c.47.1.10	98987
1keqA	248	61.07	b.74.1.1	72387
1xyiA	66	62.31		
1azpA	66	63.44	b.34.13.1	37467
2g84A	197	63.58	c.97.1.2	134766
1gpjA	404	64.03	a.151.1.1,c.2.1.7,d.58.39.1	65451,65452,65453
2hvwA	184	64.52		
1ldjB	90	65.31	g.44.1.1	73850
2hcyA	347	67.59		
1tiyA	164	71.07	c.97.1.2	107012
1lw1A	177	72.01	a.152.1.1	74290
1ovnA	248	72.58	a.71.1.1,c.47.1.7	93602,93603
1fe0A	68	73.11	d.58.17.1	39345
1lu4A	136	74.18	c.47.1.10	91124
3b8fA	142	74.28		
1kb9C	385	79.63	f.32.1.1,f.21.1.2	77315,77316
1nhyA	219	82.55	a.45.1.1,c.47.1.5	80520,80521
2h21A	440	84.32	a.166.1.1,b.85.7.3	135976,135977
2nx8A	179	84.63		
2jwhA	48	85.73		
1ppjC	379	85.82	f.32.1.1,f.21.1.2	104256,104257
1itg	166	87.40		
1r9lA	309	88.26	c.94.1.1	97262