# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oqcA 125 6.13e-15 a.24.15.1 87264 1jr8A 117 7.97e-14 a.24.15.1 67115 1j09A 468 1.058 a.97.1.1,c.26.1.1 77025,77026 1sqgA 429 1.535 a.79.1.3,c.66.1.38 105912,105913 2e7pA 116 2.840 1tbbA 332 2.941 a.211.1.2 106741 1y2kA 349 6.585 a.211.1.2 122571 1gln 468 8.499 1y7qA 98 9.656 a.28.3.2 122714 1tv9A 335 9.902 a.60.6.1,a.60.12.1,d.218.1.2 112675,112676,112677 2a6cA 83 9.98 a.35.1.13 126236 2zihA 347 10.89 1kaeA 434 14.08 c.82.1.2 72247 2bl0B 145 15.17 1lm5A 214 15.88 d.211.2.1 74029 1so2A 420 18.41 a.211.1.2 98936 2riqA 160 19.50 1f0jA 377 19.93 a.211.1.2 19346 2h5nA 133 19.94 1rnfA 120 20.18 d.5.1.1 37291 2nu8B 388 21.25 1p5zB 263 21.78 c.37.1.1 87815 2c78A 405 23.71 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 2a19B 284 24.24 3bjoA 103 27.09 2dklA 85 28.26 a.5.2.1 131555 2jacA 110 28.27 2od5A 116 28.75 1oe0A 230 30.48 c.37.1.1 92788 2fp4B 395 31.84 c.23.4.1,d.142.1.4 133897,133898 1vraB 215 33.27 2b43A 526 33.63 2exrA 524 34.00 2ht9A 146 34.66 1ejxA 100 34.92 d.8.1.1 83182 1midA 91 37.96 a.52.1.1 91280 1ybeA 449 38.64 c.1.17.2,d.41.2.2 116605,116606 2rkpA 335 39.08 1j7xA 302 39.20 c.14.1.2 66425 2pocA 367 40.42 2scpA 174 40.63 a.39.1.5 17256 1mzm 93 44.00 1fk5A 93 45.66 a.52.1.1 59866 1qksA 567 46.67 a.3.1.2,b.70.2.1 15951,27710 2rjiA 84 47.57 1su0B 159 47.79 d.224.1.2 106015 1noxA 205 48.31 d.90.1.1 40242 1zvdA 380 49.88 1tbfA 347 50.14 a.211.1.2 106743 2ie4A 589 50.38 a.118.1.2 137291 2hzfA 114 50.59 2ousA 331 50.88 2q22A 139 51.39 1zklA 353 53.03 1zm7A 230 53.18 1b3uA 588 55.62 a.118.1.2 19135 2o38A 120 55.68 2eb0A 307 55.96 2pvbA 107 56.19 a.39.1.4 17205 1om1A 332 56.35 d.144.1.7 93347 3bm1A 183 57.51 2c3zA 222 58.18 2flsA 132 58.55 1rzlA 91 58.88 a.52.1.1 17817 2o0jA 385 58.89 2olmA 140 61.31 2jgqA 233 64.52 1tadA 324 64.80 a.66.1.1,c.37.1.8 18194,32077 2oqoA 200 65.71 1ttzA 87 65.75 c.47.1.1 107309 2dfwA 396 67.27 1rztA 331 67.85 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2qacA 146 68.44 4ubpA 101 68.93 d.8.1.1 37352 1cc8A 73 69.43 d.58.17.1 39343 2grmA 317 70.23 3b57A 209 71.50 2erbA 125 72.69 1ymiA 334 73.89 2pw4A 188 74.12 2oe3A 114 75.32 2ih3C 122 75.45 1iioA 84 75.81 a.39.4.1 66150 1r3jC 124 77.32 f.14.1.1 96932 1zh5A 195 78.08 a.4.5.46,d.58.7.1 125073,125074 1mumA 295 78.30 c.1.12.7 85108 2dvzA 314 80.71 1kk8B 139 81.79 a.39.1.5 77430 1t6nA 220 82.30 c.37.1.19 106576 2f6sA 201 82.57 a.265.1.1 133058 1wtyA 119 83.46 a.24.16.2 114880 1nox 205 83.61 1d3yA 301 83.75 e.12.1.1 43252 2bsnA 145 84.71 2qk2A 242 86.15 1vzwA 244 87.46 c.1.2.1 120553 1wdcB 156 87.81 a.39.1.5 17302 1nrlA 316 89.32 a.123.1.1 92091 3cjpA 272 89.45 1jbeA 128 89.62 c.23.1.1 62845