# This file is the result of combining several RDB files, specifically # T0395.t2k.dssp-ebghstl.rdb (weight 1.53986) # T0395.t2k.stride-ebghtl.rdb (weight 1.24869) # T0395.t2k.str.rdb (weight 1.53983) # These files were combined by translating their predictions into EHL # predictions with tables generated by compare-real, and then combining # those predictions with weights proportional to their mutual information # with the EHL alphabet. The comments from the individual files follow. # # Comments from T0395.t2k.dssp-ebghstl.rdb # ============================================ # TARGET T0395 # Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0395.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 281 # # ============================================ # Comments from T0395.t2k.stride-ebghtl.rdb # ============================================ # TARGET T0395 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0395.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 281 # # ============================================ # Comments from T0395.t2k.str.rdb # ============================================ # TARGET T0395 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 13 (1 str ) # The input amino acid frequencies were determined from # alignment T0395.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 281 # # ============================================ Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.0147 0.0271 0.9582 2 R 0.0613 0.1106 0.8281 3 L 0.0996 0.1578 0.7426 4 G 0.0959 0.1344 0.7697 5 D 0.0957 0.1261 0.7781 6 A 0.3007 0.2962 0.4031 7 A 0.5048 0.2416 0.2536 8 E 0.5777 0.2827 0.1396 9 L 0.6433 0.2324 0.1243 10 C 0.5486 0.2369 0.2145 11 Y 0.3827 0.2655 0.3518 12 N 0.2098 0.2253 0.5650 13 L 0.1370 0.1621 0.7009 14 T 0.0737 0.1947 0.7316 15 S 0.0469 0.2831 0.6700 16 S 0.0454 0.3629 0.5917 17 Y 0.0336 0.5087 0.4577 18 L 0.0296 0.5724 0.3979 19 Q 0.0318 0.5683 0.3999 20 I 0.0343 0.5466 0.4191 21 A 0.0279 0.5030 0.4691 22 A 0.0198 0.5535 0.4267 23 E 0.0167 0.5788 0.4046 24 S 0.0159 0.6442 0.3399 25 D 0.0178 0.6419 0.3403 26 S 0.0144 0.6783 0.3073 27 I 0.0088 0.7906 0.2006 28 I 0.0062 0.8729 0.1209 29 A 0.0060 0.8856 0.1084 30 Q 0.0057 0.8811 0.1132 31 T 0.0053 0.8985 0.0962 32 Q 0.0047 0.9138 0.0816 33 R 0.0046 0.9244 0.0710 34 A 0.0046 0.9239 0.0715 35 I 0.0046 0.9292 0.0662 36 N 0.0044 0.9128 0.0827 37 T 0.0045 0.9017 0.0938 38 T 0.0045 0.8867 0.1087 39 K 0.0051 0.8260 0.1689 40 S 0.0048 0.7693 0.2260 41 I 0.0062 0.7480 0.2458 42 L 0.0040 0.8946 0.1014 43 I 0.0038 0.9506 0.0455 44 N 0.0041 0.9627 0.0332 45 E 0.0040 0.9695 0.0265 46 T 0.0041 0.9687 0.0273 47 F 0.0044 0.9634 0.0321 48 P 0.0041 0.9563 0.0395 49 K 0.0045 0.9337 0.0618 50 W 0.0074 0.8836 0.1091 51 S 0.0129 0.7696 0.2175 52 P 0.0155 0.5307 0.4538 53 L 0.0373 0.1838 0.7789 54 N 0.0390 0.0955 0.8655 55 G 0.0437 0.0860 0.8703 56 E 0.2151 0.0608 0.7241 57 I 0.7386 0.0122 0.2491 58 S 0.9215 0.0057 0.0728 59 F 0.9518 0.0051 0.0431 60 S 0.9054 0.0078 0.0868 61 Y 0.6959 0.0155 0.2886 62 N 0.2679 0.0350 0.6970 63 G 0.0529 0.0471 0.8999 64 G 0.0277 0.1453 0.8270 65 K 0.0173 0.5468 0.4359 66 D 0.0101 0.7891 0.2008 67 C 0.0052 0.9531 0.0417 68 Q 0.0052 0.9700 0.0248 69 V 0.0059 0.9720 0.0222 70 L 0.0044 0.9752 0.0204 71 L 0.0058 0.9737 0.0204 72 L 0.0041 0.9748 0.0211 73 L 0.0037 0.9741 0.0222 74 Y 0.0037 0.9670 0.0293 75 L 0.0038 0.9407 0.0555 76 S 0.0042 0.8462 0.1496 77 C 0.0103 0.6611 0.3286 78 L 0.0175 0.2370 0.7455 79 W 0.0189 0.1390 0.8421 80 E 0.0293 0.0691 0.9015 81 Y 0.0966 0.0309 0.8725 82 Y 0.3173 0.0158 0.6669 83 I 0.8429 0.0103 0.1468 84 V 0.9270 0.0062 0.0669 85 K 0.9017 0.0070 0.0914 86 L 0.7134 0.0152 0.2714 87 S 0.2441 0.0268 0.7291 88 Q 0.0581 0.0782 0.8638 89 S 0.0349 0.0839 0.8812 90 Q 0.0772 0.0947 0.8281 91 F 0.1052 0.0778 0.8170 92 D 0.0475 0.1200 0.8324 93 G 0.0135 0.6714 0.3151 94 K 0.0154 0.7639 0.2207 95 F 0.0171 0.8399 0.1430 96 H 0.0158 0.8534 0.1308 97 R 0.0210 0.8144 0.1646 98 F 0.0206 0.8173 0.1621 99 P 0.0135 0.8591 0.1274 100 L 0.0118 0.8850 0.1033 101 T 0.0126 0.8795 0.1080 102 K 0.0220 0.8352 0.1428 103 L 0.0321 0.7993 0.1686 104 P 0.0356 0.7693 0.1951 105 T 0.0409 0.6898 0.2693 106 V 0.1132 0.4065 0.4803 107 F 0.1619 0.1108 0.7273 108 I 0.2804 0.0755 0.6440 109 D 0.4245 0.0544 0.5211 110 H 0.5685 0.0761 0.3555 111 D 0.5986 0.0715 0.3299 112 D 0.5463 0.0693 0.3844 113 T 0.3643 0.0693 0.5664 114 F 0.1595 0.0707 0.7699 115 K 0.0605 0.1543 0.7852 116 T 0.0296 0.3274 0.6430 117 L 0.0234 0.5601 0.4164 118 E 0.0201 0.7023 0.2776 119 N 0.0137 0.8368 0.1495 120 F 0.0144 0.8782 0.1073 121 I 0.0127 0.9217 0.0657 122 E 0.0132 0.9343 0.0525 123 E 0.0098 0.9365 0.0536 124 T 0.0084 0.9263 0.0653 125 S 0.0079 0.9038 0.0884 126 L 0.0064 0.8135 0.1801 127 R 0.0088 0.5864 0.4048 128 Y 0.0244 0.2659 0.7097 129 S 0.0452 0.2010 0.7538 130 L 0.0420 0.3436 0.6144 131 S 0.0537 0.4062 0.5401 132 L 0.0882 0.4975 0.4143 133 Y 0.1460 0.4316 0.4225 134 E 0.1528 0.4292 0.4179 135 S 0.1282 0.3927 0.4791 136 D 0.0660 0.3212 0.6128 137 R 0.0386 0.2030 0.7584 138 D 0.0242 0.4362 0.5397 139 K 0.0280 0.5532 0.4187 140 C 0.0413 0.6286 0.3301 141 E 0.0639 0.5760 0.3601 142 T 0.0835 0.4501 0.4664 143 M 0.0752 0.5502 0.3746 144 A 0.0465 0.6989 0.2546 145 E 0.0624 0.6799 0.2577 146 A 0.0497 0.6939 0.2564 147 F 0.0469 0.7110 0.2421 148 E 0.0285 0.8148 0.1567 149 T 0.0178 0.8897 0.0924 150 F 0.0120 0.9118 0.0762 151 L 0.0092 0.9154 0.0754 152 Q 0.0095 0.8579 0.1326 153 V 0.0109 0.7182 0.2709 154 F 0.0255 0.2263 0.7483 155 P 0.0074 0.0778 0.9148 156 E 0.0089 0.0427 0.9484 157 T 0.1244 0.0163 0.8593 158 K 0.5551 0.0050 0.4399 159 A 0.9482 0.0025 0.0493 160 I 0.9755 0.0024 0.0221 161 V 0.9736 0.0024 0.0240 162 I 0.9313 0.0026 0.0661 163 G 0.7706 0.0029 0.2265 164 I 0.5536 0.0059 0.4404 165 R 0.3699 0.0170 0.6131 166 H 0.1962 0.0513 0.7526 167 T 0.0875 0.0536 0.8589 168 D 0.0351 0.0416 0.9233 169 P 0.0258 0.1143 0.8599 170 F 0.0320 0.2245 0.7434 171 G 0.0460 0.2800 0.6741 172 E 0.0468 0.4151 0.5381 173 H 0.0722 0.3496 0.5781 174 L 0.1057 0.2637 0.6306 175 K 0.1256 0.0778 0.7966 176 P 0.1532 0.0459 0.8008 177 I 0.2557 0.0529 0.6914 178 Q 0.2742 0.0484 0.6774 179 K 0.2360 0.0537 0.7103 180 T 0.1848 0.0454 0.7698 181 D 0.0621 0.0467 0.8912 182 A 0.0132 0.1398 0.8470 183 N 0.0113 0.1137 0.8750 184 W 0.0415 0.1156 0.8429 185 P 0.0397 0.1558 0.8045 186 D 0.0702 0.1922 0.7376 187 F 0.4278 0.1368 0.4353 188 Y 0.6966 0.0572 0.2462 189 R 0.7316 0.0602 0.2082 190 L 0.5285 0.1184 0.3531 191 Q 0.1733 0.1680 0.6587 192 P 0.0577 0.4219 0.5204 193 L 0.0706 0.4628 0.4666 194 L 0.0712 0.4874 0.4414 195 H 0.0878 0.3177 0.5945 196 W 0.1050 0.2056 0.6893 197 N 0.1215 0.1666 0.7119 198 L 0.0095 0.9055 0.0850 199 A 0.0041 0.9419 0.0540 200 N 0.0040 0.9549 0.0411 201 I 0.0037 0.9727 0.0236 202 W 0.0037 0.9755 0.0208 203 S 0.0037 0.9748 0.0215 204 F 0.0037 0.9759 0.0204 205 L 0.0037 0.9752 0.0211 206 L 0.0037 0.9597 0.0366 207 Y 0.0037 0.8795 0.1168 208 S 0.0046 0.4346 0.5608 209 N 0.0104 0.0172 0.9724 210 E 0.0293 0.0092 0.9615 211 P 0.0942 0.0125 0.8934 212 I 0.1585 0.0821 0.7594 213 C 0.0735 0.2598 0.6668 214 E 0.0421 0.5739 0.3839 215 L 0.0511 0.6687 0.2802 216 Y 0.0413 0.6832 0.2756 217 R 0.0499 0.5064 0.4437 218 Y 0.0186 0.2495 0.7319 219 G 0.0292 0.0325 0.9383 220 F 0.1641 0.0188 0.8171 221 T 0.3332 0.0289 0.6379 222 S 0.3600 0.0509 0.5891 223 L 0.2489 0.0829 0.6682 224 G 0.2132 0.0715 0.7153 225 N 0.2576 0.0503 0.6922 226 V 0.1754 0.0570 0.7675 227 E 0.1186 0.0646 0.8167 228 E 0.0820 0.0599 0.8581 229 T 0.0960 0.0520 0.8520 230 L 0.1015 0.0346 0.8639 231 P 0.1256 0.0409 0.8335 232 N 0.0788 0.0479 0.8733 233 P 0.0404 0.1386 0.8210 234 H 0.0248 0.2595 0.7157 235 L 0.0313 0.2629 0.7058 236 R 0.0882 0.2086 0.7032 237 K 0.1096 0.2042 0.6862 238 D 0.0818 0.2582 0.6600 239 K 0.0615 0.3025 0.6361 240 N 0.0404 0.2642 0.6954 241 S 0.0459 0.1796 0.7745 242 T 0.0880 0.1750 0.7370 243 P 0.1009 0.2597 0.6394 244 L 0.0380 0.5446 0.4175 245 K 0.0302 0.6093 0.3605 246 L 0.0394 0.6515 0.3092 247 N 0.0524 0.6260 0.3216 248 F 0.0418 0.7543 0.2039 249 E 0.0457 0.7799 0.1744 250 W 0.0334 0.8131 0.1535 251 E 0.0332 0.7726 0.1942 252 I 0.0329 0.7406 0.2265 253 E 0.0305 0.7304 0.2391 254 N 0.0253 0.6711 0.3036 255 R 0.0192 0.5758 0.4050 256 Y 0.0197 0.4887 0.4915 257 K 0.0364 0.4465 0.5170 258 H 0.0387 0.4263 0.5350 259 N 0.0292 0.3773 0.5935 260 E 0.0207 0.5650 0.4144 261 V 0.0196 0.6470 0.3334 262 T 0.0215 0.6650 0.3135 263 K 0.0223 0.6881 0.2896 264 A 0.0212 0.6492 0.3296 265 E 0.0189 0.5812 0.3999 266 P 0.0241 0.4883 0.4876 267 I 0.0379 0.4706 0.4916 268 P 0.0513 0.4727 0.4760 269 I 0.0421 0.4705 0.4874 270 A 0.0274 0.4676 0.5050 271 D 0.0140 0.5711 0.4148 272 E 0.0137 0.6011 0.3853 273 D 0.0160 0.6174 0.3666 274 L 0.0198 0.5850 0.3952 275 V 0.0224 0.5969 0.3807 276 K 0.0265 0.6661 0.3074 277 I 0.0242 0.7279 0.2480 278 E 0.0238 0.7090 0.2671 279 N 0.0255 0.6028 0.3717 280 L 0.0310 0.4961 0.4729 281 H 0.0337 0.4401 0.5262 282 E 0.0324 0.3553 0.6123 283 D 0.0611 0.2636 0.6752 284 Y 0.1429 0.1695 0.6876 285 Y 0.1621 0.0747 0.7632 286 P 0.1986 0.1252 0.6762 287 G 0.2574 0.1732 0.5694 288 W 0.3922 0.1894 0.4184 289 Y 0.5335 0.1275 0.3390 290 L 0.4384 0.0856 0.4760 291 V 0.2232 0.0700 0.7068 292 D 0.0810 0.1482 0.7708 293 D 0.0344 0.5431 0.4225 294 K 0.0166 0.8216 0.1619 295 L 0.0157 0.8591 0.1252 296 E 0.0130 0.8713 0.1158 297 R 0.0177 0.8324 0.1498 298 A 0.0129 0.6259 0.3613 299 G 0.0291 0.2571 0.7139 300 R 0.0747 0.2293 0.6960 301 I 0.2160 0.2872 0.4968 302 K 0.2652 0.2574 0.4774 303 K 0.2109 0.1840 0.6051 304 K 0.0180 0.0262 0.9558