# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 4.91e-31 2goyA 275 5.76e-31 1surA 215 9.62e-29 c.26.2.2 31620 1sur 215 7.08e-28 1zunA 325 6.45e-24 c.26.2.2 125676 1wy5A 317 1.45e-05 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 4.13e-05 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1gpmA 525 6.93e-05 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2pg3A 232 0.000434 2dplA 308 0.000580 1xngA 268 0.000719 c.26.2.1 122186 2e18A 257 0.001675 1k92A 455 0.00995 c.26.2.1,d.210.1.1 68325,68326 2nsyA 271 0.01669 c.26.2.1 31612 1ru8A 232 0.01767 c.26.2.1 97849 1vl2A 421 0.03055 c.26.2.1,d.210.1.1 108708,108709 2c5sA 413 0.1262 c.26.2.6,d.308.1.1 129950,129951 1ne7A 289 0.1348 c.124.1.1 91833 1m1zA 513 0.1907 c.26.2.1,d.153.1.1 78457,78458 1korA 400 0.2210 c.26.2.1,d.210.1.1 72824,72825 1wxiA 275 0.2251 c.26.2.1 121400 1fs5A 266 0.2803 c.124.1.1 65044 2hmaA 376 0.2872 1kqpA 271 0.3338 c.26.2.1 72883 1vl1A 232 0.7873 c.124.1.1 108707 2d13A 227 0.9343 c.26.2.1 131121 1q15A 503 1.311 c.26.2.1,d.153.1.1 95538,95539 1pbtA 244 1.648 c.124.1.1 94416 2h6eA 344 1.788 2bkxA 242 1.907 2c81A 418 3.902 2fq6A 415 4.783 c.67.1.3 133939 3cqyA 370 5.117 1vl6A 388 5.342 c.2.1.7,c.58.1.3 108724,108725 3bn1A 373 6.363 1ofhA 310 6.694 c.37.1.20 86948 3ch7A 266 7.918 2g1kA 176 8.084 c.37.1.2 134519 3cssA 267 8.435 1y89A 238 9.245 2cb1A 412 9.99 1ct9A 553 10.03 c.26.2.1,d.153.1.1 31616,41834 2f3nA 76 12.04 a.60.1.2 132885 1svvA 359 13.08 c.67.1.1 106054 3bs5A 106 16.76 1i6pA 220 17.31 c.53.2.1 61848 1tlfA 301 18.03 c.93.1.1 35687 1b9hA 388 18.85 c.67.1.4 34488 1ztcA 221 20.54 d.157.1.11 125635 2ogeA 399 20.63 2iwnA 97 20.67 1fpqA 372 20.76 a.4.5.29,c.66.1.12 59947,59948 3bs5B 80 22.14 2j0eA 266 24.09 1cl2A 395 24.59 c.67.1.3 34397 1cl1A 395 24.89 c.67.1.3 34395 2b8tA 223 25.56 c.37.1.24,g.39.1.14 128109,128110 1g3qA 237 26.19 c.37.1.10 60237 2qgqA 304 26.24 1lssA 140 28.89 c.2.1.9 74246 1qhsA 178 29.10 c.37.1.3 31938 2d0bA 310 29.39 2gsaA 432 30.15 c.67.1.4 34446 1io2A 213 30.20 c.55.3.1 62612 2iyvA 184 32.31 c.37.1.2 137812 1gtzA 156 32.48 c.23.13.1 70539 2f7lA 455 33.39 2qvcA 313 33.83 1qo0D 196 35.14 c.23.1.3 31125 2i1oA 398 35.71 1iu9A 111 38.09 c.78.2.1 90694 1kmkA 406 38.16 c.67.1.3 68696 1lh0A 213 38.89 c.61.1.1 73896 2hnkA 239 38.90 2qt1A 207 39.41 3c6qA 311 41.18 1vid 221 42.19 1uqrA 154 43.05 c.23.13.1 99779 1qpbA 563 43.26 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2egoA 96 45.53 1eg5A 384 46.26 c.67.1.3 34429 3bs7A 78 55.33 1hd7A 318 55.99 d.151.1.1 41780 2egxA 269 57.68 2z4sA 440 59.10 2ioyA 283 59.95 2jhfA 374 62.67 b.35.1.2,c.2.1.1 138314,138315 1jf9A 408 66.09 c.67.1.3 62931 1kw4A 89 67.35 a.60.1.2 73077 2g1uA 155 67.70 1pydA 556 68.78 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2gpyA 233 68.82 1mkyA 439 69.53 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1ox6A 555 70.76 c.1.2.1,c.23.16.1 87505,87506 2f4mA 295 71.24 1hozA 339 72.94 c.70.1.1 65898 1kicA 339 74.63 c.70.1.1 72510 2px0A 296 75.32 1uufA 369 76.21 b.35.1.2,c.2.1.1 100006,100007 1c0nA 406 76.26 c.67.1.3 34433 1h2bA 359 76.80 b.35.1.2,c.2.1.1 90543,90544 2p5sA 199 78.34 1eluA 390 79.49 c.67.1.3 34434 1t3iA 420 80.35 c.67.1.3 106354 2pwyA 258 80.96 1din 236 81.12 2rf4B 87 81.58 1h05A 146 82.20 c.23.13.1 76433 1t0aA 159 82.38 d.79.5.1 112192 3b9gA 328 82.72 1ecxA 384 84.61 c.67.1.3 34431 2cl5A 221 85.63 c.66.1.1 130570 1h7eA 245 85.97 c.68.1.13 60717 1j32A 388 88.26 c.67.1.1 77067 3bdvA 191 88.54