# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 1.21e-31 2goyA 275 2.44e-31 1surA 215 3.00e-29 c.26.2.2 31620 1sur 215 2.01e-28 1zunA 325 4.22e-24 c.26.2.2 125676 1wy5A 317 6.59e-06 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 2.85e-05 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1gpmA 525 7.17e-05 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2pg3A 232 0.000339 2dplA 308 0.000469 1xngA 268 0.000752 c.26.2.1 122186 2e18A 257 0.001005 1k92A 455 0.01010 c.26.2.1,d.210.1.1 68325,68326 2nsyA 271 0.01372 c.26.2.1 31612 1vl2A 421 0.02149 c.26.2.1,d.210.1.1 108708,108709 1ru8A 232 0.02468 c.26.2.1 97849 1korA 400 0.1338 c.26.2.1,d.210.1.1 72824,72825 2hmaA 376 0.1533 1ne7A 289 0.1619 c.124.1.1 91833 1m1zA 513 0.1664 c.26.2.1,d.153.1.1 78457,78458 2c5sA 413 0.1739 c.26.2.6,d.308.1.1 129950,129951 1kqpA 271 0.2247 c.26.2.1 72883 1fs5A 266 0.2265 c.124.1.1 65044 1wxiA 275 0.3345 c.26.2.1 121400 1vl1A 232 0.8438 c.124.1.1 108707 1q15A 503 1.207 c.26.2.1,d.153.1.1 95538,95539 2bkxA 242 1.870 2d13A 227 2.065 c.26.2.1 131121 1pbtA 244 2.391 c.124.1.1 94416 1vl6A 388 3.588 c.2.1.7,c.58.1.3 108724,108725 2c81A 418 3.603 2h6eA 344 3.604 1y89A 238 4.317 1ofhA 310 4.696 c.37.1.20 86948 3bn1A 373 4.942 2cb1A 412 6.079 1ct9A 553 6.212 c.26.2.1,d.153.1.1 31616,41834 3cqyA 370 6.519 3ch7A 266 6.957 2g1kA 176 7.830 c.37.1.2 134519 2fq6A 415 8.002 c.67.1.3 133939 2ogeA 399 8.097 1qpbA 563 9.377 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1b9hA 388 10.24 c.67.1.4 34488 3cssA 267 10.35 1tlfA 301 12.74 c.93.1.1 35687 2b8tA 223 12.92 c.37.1.24,g.39.1.14 128109,128110 1io2A 213 14.25 c.55.3.1 62612 2f3nA 76 17.25 a.60.1.2 132885 1cl1A 395 17.39 c.67.1.3 34395 2d0bA 310 19.45 3bs5B 80 20.05 1i6pA 220 21.01 c.53.2.1 61848 2egxA 269 21.10 1kmkA 406 21.57 c.67.1.3 68696 3bs5A 106 22.91 1t3iA 420 25.24 c.67.1.3 106354 2ri0A 234 25.40 1pydA 556 25.51 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1zpdA 568 25.78 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1qhsA 178 27.27 c.37.1.3 31938 1jf9A 408 27.41 c.67.1.3 62931 2iyvA 184 29.52 c.37.1.2 137812 2px0A 296 32.55 2j0eA 266 35.03 2qt1A 207 35.39 2z4sA 440 35.46 2gsaA 432 35.49 c.67.1.4 34446 1g3qA 237 35.53 c.37.1.10 60237 1iu9A 111 37.67 c.78.2.1 90694 1elqA 390 39.30 c.67.1.3 34436 1ztcA 221 40.37 d.157.1.11 125635 1cl2A 395 44.90 c.67.1.3 34397 2hnkA 239 46.25 1qo0D 196 48.11 c.23.1.3 31125 1tq8A 163 48.91 c.26.2.4 107204 1svvA 359 49.06 c.67.1.1 106054 1vid 221 51.38 2qvcA 313 53.04 1c0nA 406 54.37 c.67.1.3 34433 1eluA 390 55.10 c.67.1.3 34434 1eg5A 384 56.05 c.67.1.3 34429 2egoA 96 56.31 3bdvA 191 57.58 1xx6A 191 58.15 c.37.1.24,g.39.1.14 116139,116140 2hxtA 441 59.34 1din 236 61.53 3b6nA 187 62.95 1js3A 486 63.65 c.67.1.6 67215 2gpyA 233 63.71 2dykA 161 64.31 3c6qA 311 66.05 2pwyA 258 66.28 2iwnA 97 68.60 1kw4A 89 70.10 a.60.1.2 73077 2f4mA 295 70.22 1iu8A 206 70.35 c.56.4.1 71436 1gtzA 156 73.59 c.23.13.1 70539 3bs7A 78 74.31 1ekjA 221 75.28 c.53.2.1 33364 2hneA 436 75.64 2jhfA 374 77.36 b.35.1.2,c.2.1.1 138314,138315 1lssA 140 78.21 c.2.1.9 74246 1t0aA 159 78.40 d.79.5.1 112192 2e9yA 316 78.65 1f1gA 154 80.20 b.1.8.1 76153 1wxaA 116 80.58 d.15.1.5 121395 1uqrA 154 80.93 c.23.13.1 99779 1fyvA 161 81.28 c.23.2.1 31127 2rf4B 87 82.53 1jx6A 342 85.88 c.93.1.1 67406 1ojxA 263 86.28 c.1.10.1 93164 1mkyA 439 87.47 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2ieaA 886 87.53 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1ecxA 384 87.64 c.67.1.3 34431 2cl5A 221 87.99 c.66.1.1 130570 1r1mA 164 88.53 d.79.7.1 96820 1h7eA 245 88.69 c.68.1.13 60717 1ox6A 555 89.56 c.1.2.1,c.23.16.1 87505,87506