# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2goyA 275 8.81e-36 2oq2A 261 1.16e-35 1surA 215 3.73e-33 c.26.2.2 31620 1sur 215 3.22e-32 1zunA 325 3.88e-27 c.26.2.2 125676 1wy5A 317 1.26e-06 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 1.17e-05 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1gpmA 525 1.30e-05 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2pg3A 232 7.89e-05 1xngA 268 8.25e-05 c.26.2.1 122186 2dplA 308 0.000125 2e18A 257 0.000419 2nsyA 271 0.004145 c.26.2.1 31612 1k92A 455 0.005049 c.26.2.1,d.210.1.1 68325,68326 1vl2A 421 0.01154 c.26.2.1,d.210.1.1 108708,108709 1ru8A 232 0.01215 c.26.2.1 97849 1korA 400 0.03748 c.26.2.1,d.210.1.1 72824,72825 2hmaA 376 0.05233 1kqpA 271 0.05999 c.26.2.1 72883 1fs5A 266 0.09578 c.124.1.1 65044 1ne7A 289 0.1352 c.124.1.1 91833 1wxiA 275 0.1520 c.26.2.1 121400 2c5sA 413 0.2527 c.26.2.6,d.308.1.1 129950,129951 2d13A 227 0.2653 c.26.2.1 131121 1m1zA 513 0.3740 c.26.2.1,d.153.1.1 78457,78458 1q15A 503 0.3965 c.26.2.1,d.153.1.1 95538,95539 1vl1A 232 0.6167 c.124.1.1 108707 2bkxA 242 0.6569 2h6eA 344 0.6796 1pbtA 244 1.362 c.124.1.1 94416 3bn1A 373 1.742 1vl6A 388 2.217 c.2.1.7,c.58.1.3 108724,108725 2fq6A 415 3.310 c.67.1.3 133939 2c81A 418 3.833 2cb1A 412 4.676 1ct9A 553 5.916 c.26.2.1,d.153.1.1 31616,41834 1y89A 238 6.665 2ogeA 399 7.115 2f3nA 76 7.212 a.60.1.2 132885 3ch7A 266 7.247 2ri0A 234 7.900 3cqyA 370 8.054 2g1kA 176 8.127 c.37.1.2 134519 3cssA 267 8.136 1b9hA 388 8.881 c.67.1.4 34488 1ofhA 310 9.212 c.37.1.20 86948 1yzhA 214 12.20 c.66.1.53 124277 1qpbA 563 14.80 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 3bs5A 106 15.32 1iv3A 152 16.81 d.79.5.1 76828 1t0aA 159 17.70 d.79.5.1 112192 1qhsA 178 17.89 c.37.1.3 31938 1cl1A 395 18.73 c.67.1.3 34395 1tq8A 163 19.58 c.26.2.4 107204 1cl2A 395 21.04 c.67.1.3 34397 1uufA 369 22.17 b.35.1.2,c.2.1.1 100006,100007 2j0eA 266 22.46 1gx1A 160 22.64 d.79.5.1 70675 1h7eA 245 24.41 c.68.1.13 60717 2pwyA 258 26.51 3bs5B 80 27.89 2qvcA 313 30.24 1fyvA 161 30.51 c.23.2.1 31127 3c6qA 311 32.26 1tlfA 301 32.92 c.93.1.1 35687 2b8tA 223 33.17 c.37.1.24,g.39.1.14 128109,128110 1kmkA 406 33.35 c.67.1.3 68696 2iyvA 184 35.66 c.37.1.2 137812 1x7yB 342 39.76 c.36.1.7,c.48.1.2 114945,114946 2rjoA 332 40.64 3b6nA 187 43.10 2e85A 159 45.06 2blnA 305 45.89 b.46.1.1,c.65.1.1 128734,128735 2hneA 436 48.16 1p5sA 203 49.17 a.40.1.1 94147 1hozA 339 49.37 c.70.1.1 65898 2q71A 356 50.68 1io2A 213 50.75 c.55.3.1 62612 1lssA 140 51.25 c.2.1.9 74246 2f4dA 184 52.56 1lnqA 336 53.57 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 1pydA 556 54.13 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1svvA 359 54.24 c.67.1.1 106054 1jvbA 347 57.66 b.35.1.2,c.2.1.1 77181,77182 3b9gA 328 59.22 1tjyA 316 59.29 c.93.1.1 107062 1ojxA 263 59.89 c.1.10.1 93164 2e0tA 151 60.95 2ywnA 157 61.11 2px0A 296 61.17 2gmsA 390 61.67 1y9aA 360 62.50 2gpyA 233 62.73 2qt1A 207 63.17 2ouiA 360 63.43 2ajgA 196 64.19 1gtzA 156 64.67 c.23.13.1 70539 1uqrA 154 65.46 c.23.13.1 99779 1pytA 94 65.98 d.58.3.1 39064 1kicA 339 65.99 c.70.1.1 72510 1h2bA 359 66.07 b.35.1.2,c.2.1.1 90543,90544 2hxtA 441 66.76 1jbwA 428 67.78 c.59.1.2,c.72.2.2 62860,62861 2z2nA 299 68.11 2jhfA 374 70.07 b.35.1.2,c.2.1.1 138314,138315 1g3qA 237 71.20 c.37.1.10 60237 2egxA 269 72.36 3bs7A 78 72.84 2eihA 343 73.18 1c0nA 406 73.29 c.67.1.3 34433 3cg0A 140 75.30 2afbA 351 76.74 c.72.1.1 126674 2qgqA 304 76.83 1zmaA 118 78.56 c.47.1.1 125354 1jf9A 408 79.43 c.67.1.3 62931 1wxaA 116 81.44 d.15.1.5 121395 1kw4A 89 82.03 a.60.1.2 73077 2hufA 393 83.54 1axeA 374 84.30 b.35.1.2,c.2.1.1 24681,29697 1jx6A 342 88.16 c.93.1.1 67406 1pcaA 95 88.39 d.58.3.1 39063 1jqbA 351 88.65 b.35.1.2,c.2.1.1 77151,77152 1vid 221 89.32