# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 2.91e-26 2goyA 275 4.17e-26 1surA 215 3.12e-24 c.26.2.2 31620 1sur 215 1.70e-23 1zunA 325 2.37e-20 c.26.2.2 125676 1wy5A 317 0.000138 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 0.000258 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1gpmA 525 0.000786 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2pg3A 232 0.002617 1xngA 268 0.005175 c.26.2.1 122186 2dplA 308 0.007373 2e18A 257 0.009045 1k92A 455 0.03000 c.26.2.1,d.210.1.1 68325,68326 2nsyA 271 0.06328 c.26.2.1 31612 1ru8A 232 0.08496 c.26.2.1 97849 1vl2A 421 0.08899 c.26.2.1,d.210.1.1 108708,108709 1ne7A 289 0.5441 c.124.1.1 91833 2hmaA 376 0.5781 1korA 400 0.6238 c.26.2.1,d.210.1.1 72824,72825 1kqpA 271 0.6591 c.26.2.1 72883 1fs5A 266 0.6845 c.124.1.1 65044 1m1zA 513 0.7385 c.26.2.1,d.153.1.1 78457,78458 2d13A 227 0.9416 c.26.2.1 131121 1wxiA 275 0.9568 c.26.2.1 121400 2c5sA 413 1.055 c.26.2.6,d.308.1.1 129950,129951 3bn1A 373 3.409 2bkxA 242 3.447 1vl1A 232 4.251 c.124.1.1 108707 1q15A 503 7.372 c.26.2.1,d.153.1.1 95538,95539 1ofhA 310 7.650 c.37.1.20 86948 1y89A 238 7.718 2c81A 418 7.756 1pbtA 244 8.664 c.124.1.1 94416 1b9hA 388 10.94 c.67.1.4 34488 2cb1A 412 12.79 2f3nA 76 13.74 a.60.1.2 132885 2h6eA 344 13.98 2fq6A 415 14.99 c.67.1.3 133939 2ogeA 399 15.89 1tlfA 301 17.05 c.93.1.1 35687 1ztcA 221 17.95 d.157.1.11 125635 2g1kA 176 19.28 c.37.1.2 134519 3cqyA 370 20.40 3cssA 267 20.63 3bs5A 106 22.05 1qpbA 563 22.18 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1vl6A 388 23.07 c.2.1.7,c.58.1.3 108724,108725 2iwnA 97 23.08 3ch7A 266 26.47 2b8tA 223 27.75 c.37.1.24,g.39.1.14 128109,128110 1qhsA 178 28.05 c.37.1.3 31938 2pwyA 258 29.35 1lssA 140 30.38 c.2.1.9 74246 1svvA 359 30.62 c.67.1.1 106054 2egxA 269 37.75 2egoA 96 39.05 1cj3A 392 39.08 c.3.1.2,d.16.1.2 30347,37878 1ct9A 553 40.80 c.26.2.1,d.153.1.1 31616,41834 1g3qA 237 41.01 c.37.1.10 60237 2j0eA 266 41.71 1hozA 339 43.47 c.70.1.1 65898 1qo0D 196 45.80 c.23.1.3 31125 1io2A 213 46.94 c.55.3.1 62612 2qvcA 313 48.09 2ehbD 143 48.11 1lh0A 213 48.48 c.61.1.1 73896 1i6pA 220 48.80 c.53.2.1 61848 1h7eA 245 49.74 c.68.1.13 60717 1kw4A 89 50.89 a.60.1.2 73077 1cl1A 395 53.45 c.67.1.3 34395 1gtzA 156 54.57 c.23.13.1 70539 1vid 221 55.36 2fnuA 375 58.74 c.67.1.4 133831 1iu9A 111 59.02 c.78.2.1 90694 2d0bA 310 60.41 2ywnA 157 61.10 2hnkA 239 62.00 1eg5A 384 64.05 c.67.1.3 34429 1ox6A 555 66.58 c.1.2.1,c.23.16.1 87505,87506 3bs5B 80 67.53 1pydA 556 69.19 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2ajgA 196 72.64 1kicA 339 72.81 c.70.1.1 72510 2iyvA 184 73.99 c.37.1.2 137812 3c6qA 311 74.57 2rf4B 87 76.51 1t0aA 159 78.87 d.79.5.1 112192 1g9oA 91 79.18 b.36.1.1 60400 1mkyA 439 79.45 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1iv3A 152 80.68 d.79.5.1 76828 1iu8A 206 85.63 c.56.4.1 71436 1i7qB 193 86.50 c.23.16.1 61902 2f4dA 184 87.99 1cl2A 395 88.24 c.67.1.3 34397 2i1nA 102 88.43 1fpqA 372 89.00 a.4.5.29,c.66.1.12 59947,59948 1h7xA 1025 89.75 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011