# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 3.45e-24 2goyA 275 5.33e-24 1surA 215 2.86e-22 c.26.2.2 31620 1sur 215 1.34e-21 1zunA 325 9.53e-19 c.26.2.2 125676 1wy5A 317 0.000419 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 0.000818 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1gpmA 525 0.002586 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2pg3A 232 0.007183 1xngA 268 0.01802 c.26.2.1 122186 2dplA 308 0.01912 2e18A 257 0.02182 1k92A 455 0.07721 c.26.2.1,d.210.1.1 68325,68326 2nsyA 271 0.1337 c.26.2.1 31612 1ru8A 232 0.1398 c.26.2.1 97849 1vl2A 421 0.1772 c.26.2.1,d.210.1.1 108708,108709 1ne7A 289 0.7303 c.124.1.1 91833 1m1zA 513 1.047 c.26.2.1,d.153.1.1 78457,78458 1fs5A 266 1.098 c.124.1.1 65044 1korA 400 1.334 c.26.2.1,d.210.1.1 72824,72825 1kqpA 271 1.337 c.26.2.1 72883 2d13A 227 1.772 c.26.2.1 131121 2c5sA 413 2.089 c.26.2.6,d.308.1.1 129950,129951 1wxiA 275 2.090 c.26.2.1 121400 2hmaA 376 2.370 1vl1A 232 4.164 c.124.1.1 108707 3bn1A 373 5.599 2bkxA 242 5.991 1pbtA 244 8.319 c.124.1.1 94416 2c81A 418 10.84 1q15A 503 11.13 c.26.2.1,d.153.1.1 95538,95539 1ofhA 310 11.47 c.37.1.20 86948 1y89A 238 13.04 2h6eA 344 13.04 2fq6A 415 15.27 c.67.1.3 133939 1b9hA 388 18.17 c.67.1.4 34488 2f3nA 76 18.32 a.60.1.2 132885 2cb1A 412 18.95 3cssA 267 19.17 1tlfA 301 20.65 c.93.1.1 35687 3bs5A 106 21.81 2g1kA 176 22.36 c.37.1.2 134519 3cqyA 370 23.13 1qpbA 563 23.35 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1ztcA 221 24.55 d.157.1.11 125635 3ch7A 266 24.73 2iwnA 97 27.63 1i6pA 220 30.25 c.53.2.1 61848 1qhsA 178 31.54 c.37.1.3 31938 2b8tA 223 32.95 c.37.1.24,g.39.1.14 128109,128110 2ogeA 399 33.00 1lssA 140 36.20 c.2.1.9 74246 1vl6A 388 38.85 c.2.1.7,c.58.1.3 108724,108725 1svvA 359 42.51 c.67.1.1 106054 2egxA 269 45.81 2qvcA 313 48.04 2egoA 96 48.32 1kw4A 89 53.52 a.60.1.2 73077 2d0bA 310 54.69 2j0eA 266 55.18 1cl1A 395 56.74 c.67.1.3 34395 1qo0D 196 57.92 c.23.1.3 31125 2ehbD 143 58.14 1g3qA 237 58.51 c.37.1.10 60237 1iv3A 152 62.04 d.79.5.1 76828 1ox6A 555 62.59 c.1.2.1,c.23.16.1 87505,87506 1h7xA 1025 63.14 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 2pwyA 258 63.36 1h7eA 245 63.51 c.68.1.13 60717 1ct9A 553 64.22 c.26.2.1,d.153.1.1 31616,41834 1t0aA 159 64.82 d.79.5.1 112192 1lh0A 213 65.51 c.61.1.1 73896 3bs5B 80 68.28 2ajgA 196 68.76 1hozA 339 70.29 c.70.1.1 65898 2fnuA 375 71.44 c.67.1.4 133831 1vid 221 73.67 1fpqA 372 73.81 a.4.5.29,c.66.1.12 59947,59948 3c6qA 311 74.37 1io2A 213 77.46 c.55.3.1 62612 2f4dA 184 78.32 2iyvA 184 78.72 c.37.1.2 137812 1pydA 556 79.92 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 3bs7A 78 82.74 1gtzA 156 82.85 c.23.13.1 70539 1eg5A 384 84.60 c.67.1.3 34429 1i7qB 193 86.95 c.23.16.1 61902 2qt1A 207 87.98 2f7lA 455 89.86