# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 1.46e-25 2goyA 275 2.36e-25 1surA 215 1.65e-23 c.26.2.2 31620 1sur 215 8.19e-23 1zunA 325 7.27e-20 c.26.2.2 125676 1wy5A 317 0.000126 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 0.000343 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1gpmA 525 0.000722 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2pg3A 232 0.002264 1xngA 268 0.005801 c.26.2.1 122186 2dplA 308 0.008045 2e18A 257 0.009051 1k92A 455 0.04546 c.26.2.1,d.210.1.1 68325,68326 2nsyA 271 0.09215 c.26.2.1 31612 1vl2A 421 0.1015 c.26.2.1,d.210.1.1 108708,108709 1ru8A 232 0.1017 c.26.2.1 97849 1m1zA 513 0.5236 c.26.2.1,d.153.1.1 78457,78458 1korA 400 0.5893 c.26.2.1,d.210.1.1 72824,72825 1ne7A 289 0.8087 c.124.1.1 91833 2c5sA 413 0.8563 c.26.2.6,d.308.1.1 129950,129951 1wxiA 275 0.9554 c.26.2.1 121400 2d13A 227 1.015 c.26.2.1 131121 1kqpA 271 1.134 c.26.2.1 72883 2hmaA 376 1.178 1fs5A 266 1.180 c.124.1.1 65044 3bn1A 373 2.715 1vl1A 232 3.024 c.124.1.1 108707 2bkxA 242 3.715 1q15A 503 5.672 c.26.2.1,d.153.1.1 95538,95539 1pbtA 244 5.943 c.124.1.1 94416 2h6eA 344 6.312 1y89A 238 6.975 2c81A 418 7.398 2fq6A 415 7.479 c.67.1.3 133939 2cb1A 412 7.619 1b9hA 388 7.804 c.67.1.4 34488 1ofhA 310 8.650 c.37.1.20 86948 1tlfA 301 14.68 c.93.1.1 35687 2g1kA 176 14.78 c.37.1.2 134519 2ogeA 399 15.74 2pwyA 258 16.86 1lssA 140 18.82 c.2.1.9 74246 3cqyA 370 20.09 2f3nA 76 20.65 a.60.1.2 132885 1ztcA 221 20.95 d.157.1.11 125635 2iwnA 97 21.98 1qo0D 196 22.27 c.23.1.3 31125 3cssA 267 22.29 1svvA 359 23.48 c.67.1.1 106054 1vl6A 388 23.95 c.2.1.7,c.58.1.3 108724,108725 2b8tA 223 24.70 c.37.1.24,g.39.1.14 128109,128110 3ch7A 266 25.68 1qpbA 563 26.21 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1cl1A 395 27.31 c.67.1.3 34395 1io2A 213 27.84 c.55.3.1 62612 3bs5A 106 28.06 1ct9A 553 28.42 c.26.2.1,d.153.1.1 31616,41834 1fpqA 372 32.83 a.4.5.29,c.66.1.12 59947,59948 1i6pA 220 35.72 c.53.2.1 61848 2j0eA 266 39.53 2qvcA 313 39.68 1cl2A 395 40.69 c.67.1.3 34397 1g3qA 237 40.99 c.37.1.10 60237 2d0bA 310 41.82 1gtzA 156 44.40 c.23.13.1 70539 1hozA 339 45.63 c.70.1.1 65898 1eluA 390 46.53 c.67.1.3 34434 1qhsA 178 46.66 c.37.1.3 31938 1vid 221 49.95 2egxA 269 52.31 1lh0A 213 53.00 c.61.1.1 73896 2egoA 96 53.08 2iyvA 184 53.37 c.37.1.2 137812 2hnkA 239 55.20 1yzhA 214 55.25 c.66.1.53 124277 2qgqA 304 56.38 3c6qA 311 59.64 1kw4A 89 61.19 a.60.1.2 73077 1i7qB 193 62.85 c.23.16.1 61902 2gsaA 432 67.55 c.67.1.4 34446 1h7eA 245 69.50 c.68.1.13 60717 1r1mA 164 71.56 d.79.7.1 96820 2p5sA 199 73.02 1eg5A 384 73.56 c.67.1.3 34429 2ioyA 283 74.80 1elqA 390 74.83 c.67.1.3 34436 1uqrA 154 74.84 c.23.13.1 99779 1pydA 556 75.53 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1h1dA 221 76.14 c.66.1.1 83452 2qt1A 207 76.72 2fnuA 375 76.99 c.67.1.4 133831 3bs5B 80 77.72 1h7xA 1025 79.78 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 2px0A 296 82.96 2ieaA 886 85.02 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1ox6A 555 86.64 c.1.2.1,c.23.16.1 87505,87506 2fhxA 246 86.79 1mkyA 439 87.20 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1kicA 339 87.52 c.70.1.1 72510 2gmsA 390 89.91