# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2goyA 275 1.49e-31 2oq2A 261 3.37e-31 1surA 215 1.30e-28 c.26.2.2 31620 1sur 215 1.08e-27 1zunA 325 1.22e-23 c.26.2.2 125676 1wy5A 317 3.18e-06 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 1.99e-05 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2pg3A 232 0.000166 1xngA 268 0.000182 c.26.2.1 122186 2e18A 257 0.000439 1gpmA 525 0.000509 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2dplA 308 0.001338 1k92A 455 0.009808 c.26.2.1,d.210.1.1 68325,68326 1vl2A 421 0.02128 c.26.2.1,d.210.1.1 108708,108709 1ru8A 232 0.02548 c.26.2.1 97849 2nsyA 271 0.02948 c.26.2.1 31612 1wxiA 275 0.09165 c.26.2.1 121400 2hmaA 376 0.1106 1korA 400 0.2655 c.26.2.1,d.210.1.1 72824,72825 1m1zA 513 0.4550 c.26.2.1,d.153.1.1 78457,78458 1kqpA 271 0.5054 c.26.2.1 72883 2c5sA 413 0.7138 c.26.2.6,d.308.1.1 129950,129951 2d13A 227 0.7504 c.26.2.1 131121 1q15A 503 1.317 c.26.2.1,d.153.1.1 95538,95539 1vl1A 232 1.843 c.124.1.1 108707 1ne7A 289 2.143 c.124.1.1 91833 1fs5A 266 2.210 c.124.1.1 65044 1pbtA 244 3.188 c.124.1.1 94416 1ct9A 553 6.341 c.26.2.1,d.153.1.1 31616,41834 2c81A 418 7.490 2h6eA 344 7.771 2bkxA 242 9.019 1elqA 390 9.97 c.67.1.3 34436 3bn1A 373 11.03 1hozA 339 13.00 c.70.1.1 65898 1eluA 390 14.68 c.67.1.3 34434 3ch7A 266 15.90 2cb1A 412 16.14 2g1kA 176 17.08 c.37.1.2 134519 3c6qA 311 17.63 2j2fA 363 18.67 2fq6A 415 19.82 c.67.1.3 133939 3cssA 267 20.49 3b9gA 328 20.65 1uufA 369 25.65 b.35.1.2,c.2.1.1 100006,100007 1t0aA 159 26.76 d.79.5.1 112192 2qvcA 313 27.12 2iwnA 97 32.89 1kicA 339 33.21 c.70.1.1 72510 1pytA 94 37.45 d.58.3.1 39064 1h67A 108 37.55 a.40.1.1 65643 2gpyA 233 37.91 2zadA 345 38.63 1qgjA 300 39.21 a.93.1.1 18691 1oq9A 363 39.91 a.25.1.2 87257 3daaA 277 43.37 e.17.1.1 43272 1iv3A 152 43.48 d.79.5.1 76828 1pa2A 306 44.92 a.93.1.1 18693 2f3nA 76 46.41 a.60.1.2 132885 2h3hA 313 46.45 2pwyA 258 46.59 2egoA 96 47.39 1qhsA 178 47.78 c.37.1.3 31938 1schA 294 51.47 a.93.1.1 18685 1ofhA 310 52.64 c.37.1.20 86948 2i1nA 102 52.80 1pcaA 95 52.84 d.58.3.1 39063 1iu9A 111 54.26 c.78.2.1 90694 2ieaA 886 58.48 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1pydA 556 59.77 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1y89A 238 59.83 2qv6A 268 60.37 3bs5A 106 61.91 1qagA 226 63.42 a.40.1.1,a.40.1.1 17400,17401 2rf4B 87 67.16 1wrvA 308 67.48 2gh1A 301 68.09 c.66.1.49 135170 1a0gA 282 68.58 e.17.1.1 43276 2h2bA 107 71.38 1wy7A 207 72.32 c.66.1.32 121433 1g9oA 91 74.13 b.36.1.1 60400 1kwmA 402 75.24 c.56.5.1,d.58.3.1 73079,73080 1ug3A 339 75.64 a.118.1.14,a.118.1.14 119671,119672 1kmkA 406 76.84 c.67.1.3 68696 1cl1A 395 77.29 c.67.1.3 34395 1jf9A 408 77.54 c.67.1.3 62931 1knvA 293 84.27 c.52.1.7 68707 1aye 401 84.33 1aopA 497 85.20 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1afrA 345 87.42 a.25.1.2 16805