# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 7.37e-28 2goyA 275 2.18e-27 1surA 215 1.37e-25 c.26.2.2 31620 1sur 215 9.51e-25 1zunA 325 1.77e-21 c.26.2.2 125676 1wy5A 317 0.000173 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 0.000214 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1gpmA 525 0.000614 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2pg3A 232 0.003053 2dplA 308 0.005943 1xngA 268 0.01141 c.26.2.1 122186 2e18A 257 0.01258 1k92A 455 0.02365 c.26.2.1,d.210.1.1 68325,68326 1ru8A 232 0.04508 c.26.2.1 97849 2nsyA 271 0.05927 c.26.2.1 31612 1vl2A 421 0.07203 c.26.2.1,d.210.1.1 108708,108709 2d13A 227 0.6131 c.26.2.1 131121 1korA 400 0.6205 c.26.2.1,d.210.1.1 72824,72825 1kqpA 271 0.7643 c.26.2.1 72883 1wxiA 275 0.8385 c.26.2.1 121400 2hmaA 376 0.9479 2c5sA 413 1.116 c.26.2.6,d.308.1.1 129950,129951 1ne7A 289 1.333 c.124.1.1 91833 1m1zA 513 1.553 c.26.2.1,d.153.1.1 78457,78458 1fs5A 266 2.304 c.124.1.1 65044 1vl1A 232 2.662 c.124.1.1 108707 2c81A 418 4.268 1q15A 503 5.918 c.26.2.1,d.153.1.1 95538,95539 3bn1A 373 6.511 2bkxA 242 7.018 1pbtA 244 7.240 c.124.1.1 94416 2f3nA 76 8.263 a.60.1.2 132885 1vl6A 388 9.893 c.2.1.7,c.58.1.3 108724,108725 1ofhA 310 10.74 c.37.1.20 86948 2h6eA 344 10.87 3bs5A 106 11.68 1y89A 238 13.36 1ztcA 221 16.58 d.157.1.11 125635 2ogeA 399 16.83 3bs5B 80 21.00 1svvA 359 21.16 c.67.1.1 106054 1b9hA 388 21.70 c.67.1.4 34488 3cqyA 370 23.48 2cb1A 412 24.91 1ct9A 553 27.17 c.26.2.1,d.153.1.1 31616,41834 3ch7A 266 27.23 2qvcA 313 27.73 1mkyA 439 27.88 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2iwnA 97 30.26 2fq6A 415 31.86 c.67.1.3 133939 3bs7A 78 34.51 1tlfA 301 35.00 c.93.1.1 35687 3cssA 267 37.77 1lssA 140 38.43 c.2.1.9 74246 1qpbA 563 42.16 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2ehbD 143 43.10 2d0bA 310 43.92 2g1kA 176 45.54 c.37.1.2 134519 3c6qA 311 47.54 1g3qA 237 51.43 c.37.1.10 60237 1r1mA 164 53.09 d.79.7.1 96820 1iv3A 152 53.56 d.79.5.1 76828 2hnkA 239 55.23 1qhsA 178 57.51 c.37.1.3 31938 2rf4B 87 58.40 2b8tA 223 59.05 c.37.1.24,g.39.1.14 128109,128110 2qt1A 207 62.41 2egxA 269 65.07 1kw4A 89 65.98 a.60.1.2 73077 1t0aA 159 66.83 d.79.5.1 112192 1lh0A 213 67.26 c.61.1.1 73896 1vid 221 67.75 2egoA 96 70.73 1hozA 339 71.06 c.70.1.1 65898 1h7xA 1025 72.07 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 1iu9A 111 74.05 c.78.2.1 90694 1eg5A 384 79.03 c.67.1.3 34429 1h7eA 245 83.10 c.68.1.13 60717 1g9oA 91 83.91 b.36.1.1 60400 1iu8A 206 84.86 c.56.4.1 71436 1v7nV 163 86.72 a.26.1.2 100476 2ioyA 283 88.43 1gtzA 156 88.70 c.23.13.1 70539 1fpqA 372 88.71 a.4.5.29,c.66.1.12 59947,59948 2c29D 337 88.84 2j0eA 266 89.64