# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2goyA 275 4.67e-26 2oq2A 261 5.09e-26 1surA 215 7.56e-24 c.26.2.2 31620 1sur 215 3.93e-23 1zunA 325 6.23e-20 c.26.2.2 125676 1ni5A 433 3.23e-05 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1wy5A 317 0.000920 c.26.2.5,d.229.1.1 121428,121429 1xngA 268 0.008914 c.26.2.1 122186 1gpmA 525 0.01018 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2pg3A 232 0.01450 2e18A 257 0.02484 1k92A 455 0.02720 c.26.2.1,d.210.1.1 68325,68326 2nsyA 271 0.04628 c.26.2.1 31612 2dplA 308 0.1122 1ru8A 232 0.1346 c.26.2.1 97849 1vl2A 421 0.1910 c.26.2.1,d.210.1.1 108708,108709 1pbtA 244 0.1924 c.124.1.1 94416 1h7xA 1025 0.2375 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 1kqpA 271 0.2650 c.26.2.1 72883 1vl1A 232 0.4903 c.124.1.1 108707 1ne7A 289 0.6188 c.124.1.1 91833 2h6eA 344 0.6344 2fnuA 375 0.7241 c.67.1.4 133831 1korA 400 0.7823 c.26.2.1,d.210.1.1 72824,72825 3cssA 267 2.066 2hmaA 376 2.116 1wxiA 275 2.577 c.26.2.1 121400 2d13A 227 2.686 c.26.2.1 131121 1pydA 556 3.034 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2j0eA 266 3.186 1qpbA 563 3.572 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2p8bA 369 4.341 1svvA 359 5.197 c.67.1.1 106054 1moqA 368 5.253 c.80.1.1 35302 1fs5A 266 5.433 c.124.1.1 65044 2cevA 299 5.796 c.42.1.1 32576 1wyuB 474 5.943 c.67.1.7 121453 1flcA 432 6.442 b.19.1.3,c.23.10.2 23837,31337 3cqyA 370 6.581 2cf5A 357 6.830 1kmkA 406 7.104 c.67.1.3 68696 1eg5A 384 7.435 c.67.1.3 34429 2qgmA 445 7.684 1iv8A 720 7.718 b.71.1.1,c.1.8.1 76842,76843 1mioA 534 7.788 c.92.2.3 35601 2eb4A 267 9.854 1ekjA 221 9.98 c.53.2.1 33364 1yp1A 202 10.93 2bkxA 242 14.13 1jf9A 408 14.28 c.67.1.3 62931 1rpnA 335 14.54 c.2.1.2 97708 1x42A 232 15.43 c.108.1.1 121677 2rijA 387 16.13 2ahdA 165 16.54 d.159.1.7 126752 2pwyA 258 17.89 2q0dA 353 18.22 1vl6A 388 18.91 c.2.1.7,c.58.1.3 108724,108725 1vid 221 20.13 1lh0A 213 20.39 c.61.1.1 73896 1mhyD 521 20.46 a.25.1.2 16780 2p11A 231 21.63 1qorA 327 22.31 b.35.1.2,c.2.1.1 24766,29782 1d3vA 323 22.33 c.42.1.1 32559 2rebA 352 22.55 c.37.1.11,d.48.1.1 32282,38767 2c5sA 413 24.61 c.26.2.6,d.308.1.1 129950,129951 2hnkA 239 26.20 1pvdA 537 26.49 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1eluA 390 27.31 c.67.1.3 34434 2g9zA 348 27.45 1hqoA 258 27.59 a.45.1.1,c.47.1.5 17749,33043 3bs5A 106 27.89 2rjoA 332 28.29 2egxA 269 28.47 1fcdA 401 28.83 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 2d0bA 310 29.41 1auiA 521 30.65 d.159.1.3 42085 2c0hA 353 30.96 c.1.8.3 129594 2p5zX 491 32.23 2f3nA 76 32.86 a.60.1.2 132885 1ks8A 433 33.45 a.102.1.2 77519 1ji0A 240 33.48 c.37.1.12 71665 2ffcA 353 33.59 c.1.2.3 133378 1kyzA 365 34.20 a.4.5.29,c.66.1.12 73312,73313 1si6X 282 34.35 d.151.1.2 118968 1y89A 238 34.80 2vchA 480 35.47 1mxgA 435 36.31 b.71.1.1,c.1.8.1 85193,85194 2zadA 345 36.61 1h1dA 221 36.86 c.66.1.1 83452 2o56A 407 37.04 1fc6A 388 37.56 b.36.1.3,c.14.1.2 64738,64739 2ogeA 399 37.62 1ydnA 295 37.71 1zv9A 172 38.97 b.2.2.2 125700 3c6gA 479 39.52 2o16A 160 39.53 d.37.1.1,d.37.1.1 138869,138870 1tqyA 424 39.99 c.95.1.1,c.95.1.1 107245,107246 1eh9A 558 40.41 b.1.18.2,b.71.1.1,c.1.8.1 21858,27785,28772 1y5iA 1246 41.19 b.52.2.2,c.81.1.1 122639,122640 1ve3A 227 41.68 c.66.1.43 120010 1fpqA 372 42.23 a.4.5.29,c.66.1.12 59947,59948 1qpaA 345 44.94 a.93.1.1 18585 2r7dA 469 45.25 2f6uA 234 45.57 c.1.4.1 133061 3bblA 287 46.01 2q4zA 312 48.47 1r13A 148 50.29 d.169.1.1,h.1.1.1 96782,96783 2b3zA 373 52.06 c.71.1.2,c.97.1.2 127807,127808 1gof 639 52.18 1ecxA 384 53.41 c.67.1.3 34431 1pl8A 356 53.51 b.35.1.2,c.2.1.1 94878,94879 1a87 321 53.91 1zgdA 312 54.18 2nx9A 464 55.53 2eihA 343 55.77 1qwyA 291 57.72 b.84.3.2 96509 3ch7A 266 58.63 1qcwA 410 58.88 c.1.4.1 28622 1a0dA 440 59.76 c.1.15.3 29533 1j08A 226 60.98 c.47.1.2,c.47.1.2 83855,83856 2qt1A 207 61.34 2c29D 337 64.44 1lssA 140 64.95 c.2.1.9 74246 1js3A 486 66.19 c.67.1.6 67215 1q15A 503 66.56 c.26.2.1,d.153.1.1 95538,95539 1ggvA 232 66.61 c.69.1.9 34683 1wzlA 585 67.32 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2cas 548 67.37 1g3qA 237 67.39 c.37.1.10 60237 2puzA 419 71.50 1gwuA 309 72.32 a.93.1.1 83351 2pzeA 229 72.92 3bs5B 80 73.65 1txuA 273 74.62 a.222.1.1 107439 1kfwA 435 75.70 c.1.8.5,d.26.3.1 77376,77377 1vefA 395 75.99 c.67.1.4 120018 2nlrA 234 76.13 b.29.1.11 24344 2g1kA 176 76.90 c.37.1.2 134519 3cbwA 353 77.71 1wp1A 474 78.33 f.5.1.1 114778 1hd7A 318 80.35 d.151.1.1 41780 1ep3A 311 80.38 c.1.4.1 28597 1io2A 213 80.68 c.55.3.1 62612 2aebA 322 82.24 c.42.1.1 126617 1h2bA 359 82.26 b.35.1.2,c.2.1.1 90543,90544 1cv2A 296 82.94 c.69.1.8 34680 2b34A 199 83.25 1fgs 428 83.78 2jhfA 374 84.26 b.35.1.2,c.2.1.1 138314,138315 2dgkA 452 84.28 1qo0D 196 85.89 c.23.1.3 31125 1tlfA 301 86.16 c.93.1.1 35687 1jqgA 433 86.53 c.56.5.1,d.58.3.1 71791,71792 2b8tA 223 86.69 c.37.1.24,g.39.1.14 128109,128110 2pq6A 482 87.08 1oi4A 193 88.01 c.23.16.2 87047