# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 2.66e-28 2goyA 275 8.08e-28 1surA 215 5.25e-26 c.26.2.2 31620 1sur 215 3.26e-25 1zunA 325 6.55e-22 c.26.2.2 125676 1wy5A 317 0.000116 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 0.000181 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1gpmA 525 0.000307 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2pg3A 232 0.002091 2dplA 308 0.003927 1xngA 268 0.006493 c.26.2.1 122186 2e18A 257 0.009163 1k92A 455 0.01575 c.26.2.1,d.210.1.1 68325,68326 1ru8A 232 0.04181 c.26.2.1 97849 2nsyA 271 0.04358 c.26.2.1 31612 1vl2A 421 0.05588 c.26.2.1,d.210.1.1 108708,108709 1korA 400 0.4779 c.26.2.1,d.210.1.1 72824,72825 2d13A 227 0.5488 c.26.2.1 131121 1wxiA 275 0.6857 c.26.2.1 121400 1kqpA 271 0.6864 c.26.2.1 72883 1m1zA 513 0.8558 c.26.2.1,d.153.1.1 78457,78458 2c5sA 413 0.8895 c.26.2.6,d.308.1.1 129950,129951 1ne7A 289 1.063 c.124.1.1 91833 2hmaA 376 1.122 1vl1A 232 2.228 c.124.1.1 108707 1fs5A 266 2.280 c.124.1.1 65044 1q15A 503 3.422 c.26.2.1,d.153.1.1 95538,95539 2c81A 418 3.589 3bn1A 373 4.663 2bkxA 242 5.413 2h6eA 344 5.443 1pbtA 244 5.810 c.124.1.1 94416 1ofhA 310 7.658 c.37.1.20 86948 1y89A 238 8.387 1vl6A 388 9.694 c.2.1.7,c.58.1.3 108724,108725 2f3nA 76 11.23 a.60.1.2 132885 3bs5A 106 12.07 1svvA 359 13.21 c.67.1.1 106054 2ogeA 399 14.55 3bs5B 80 17.19 1b9hA 388 18.04 c.67.1.4 34488 1ct9A 553 19.57 c.26.2.1,d.153.1.1 31616,41834 3ch7A 266 19.85 2qvcA 313 20.81 2cb1A 412 21.25 1ztcA 221 23.09 d.157.1.11 125635 3cqyA 370 23.78 3cssA 267 25.59 1tlfA 301 26.30 c.93.1.1 35687 1mkyA 439 32.95 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2fq6A 415 34.66 c.67.1.3 133939 3bs7A 78 34.95 1g3qA 237 35.52 c.37.1.10 60237 2hnkA 239 37.32 2g1kA 176 39.38 c.37.1.2 134519 3c6qA 311 39.58 2iwnA 97 45.40 2egxA 269 47.33 2d0bA 310 47.92 2j0eA 266 52.65 2rf4B 87 55.47 1vid 221 58.44 1lssA 140 59.86 c.2.1.9 74246 2b8tA 223 60.20 c.37.1.24,g.39.1.14 128109,128110 1fpqA 372 60.79 a.4.5.29,c.66.1.12 59947,59948 1i6pA 220 61.16 c.53.2.1 61848 1hozA 339 61.32 c.70.1.1 65898 1h7eA 245 61.57 c.68.1.13 60717 1kw4A 89 64.13 a.60.1.2 73077 1h7xA 1025 65.54 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 2qt1A 207 67.28 1qpbA 563 69.33 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1qhsA 178 69.76 c.37.1.3 31938 1v7nV 163 70.42 a.26.1.2 100476 1iu9A 111 72.35 c.78.2.1 90694 1eg5A 384 73.37 c.67.1.3 34429 2ioyA 283 73.42 1gtzA 156 74.76 c.23.13.1 70539 1x7yB 342 75.72 c.36.1.7,c.48.1.2 114945,114946 2egoA 96 78.10 1r1mA 164 79.68 d.79.7.1 96820 1iv3A 152 80.99 d.79.5.1 76828 1lh0A 213 81.66 c.61.1.1 73896 1jx6A 342 84.54 c.93.1.1 67406 3b9gA 328 84.98 1xd5A 112 86.49 b.78.1.1 115155 1t0aA 159 87.32 d.79.5.1 112192 2gpyA 233 89.16 1jbwA 428 89.54 c.59.1.2,c.72.2.2 62860,62861 2ehbD 143 89.70