# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 5.89e-28 2goyA 275 1.03e-27 1surA 215 1.04e-25 c.26.2.2 31620 1sur 215 5.87e-25 1zunA 325 9.83e-22 c.26.2.2 125676 1wy5A 317 5.63e-05 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 0.000256 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1gpmA 525 0.000462 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2pg3A 232 0.002868 2dplA 308 0.004472 1xngA 268 0.004748 c.26.2.1 122186 2e18A 257 0.008357 2nsyA 271 0.03160 c.26.2.1 31612 1k92A 455 0.05144 c.26.2.1,d.210.1.1 68325,68326 1ru8A 232 0.1061 c.26.2.1 97849 1vl2A 421 0.1097 c.26.2.1,d.210.1.1 108708,108709 1kqpA 271 0.3312 c.26.2.1 72883 1ne7A 289 0.6323 c.124.1.1 91833 1wxiA 275 0.7376 c.26.2.1 121400 1korA 400 0.7479 c.26.2.1,d.210.1.1 72824,72825 2hmaA 376 0.7864 1fs5A 266 0.8571 c.124.1.1 65044 1m1zA 513 0.8902 c.26.2.1,d.153.1.1 78457,78458 2c5sA 413 1.286 c.26.2.6,d.308.1.1 129950,129951 1vl1A 232 2.188 c.124.1.1 108707 2d13A 227 2.868 c.26.2.1 131121 2bkxA 242 3.612 1q15A 503 3.788 c.26.2.1,d.153.1.1 95538,95539 1pbtA 244 4.996 c.124.1.1 94416 2c81A 418 6.201 2g1kA 176 7.677 c.37.1.2 134519 1y89A 238 7.793 3bn1A 373 8.616 2h6eA 344 8.712 2fq6A 415 9.819 c.67.1.3 133939 1ct9A 553 17.23 c.26.2.1,d.153.1.1 31616,41834 1qpbA 563 17.43 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1b9hA 388 19.14 c.67.1.4 34488 3ch7A 266 19.16 1vl6A 388 20.60 c.2.1.7,c.58.1.3 108724,108725 1iv3A 152 21.42 d.79.5.1 76828 2ogeA 399 21.81 2cb1A 412 22.07 1cl2A 395 24.04 c.67.1.3 34397 1t0aA 159 24.20 d.79.5.1 112192 3cssA 267 24.78 1tlfA 301 24.82 c.93.1.1 35687 1i6pA 220 27.64 c.53.2.1 61848 1cl1A 395 30.06 c.67.1.3 34395 2b8tA 223 31.68 c.37.1.24,g.39.1.14 128109,128110 1gtzA 156 33.35 c.23.13.1 70539 1gx1A 160 34.23 d.79.5.1 70675 2iyvA 184 35.46 c.37.1.2 137812 1svvA 359 37.74 c.67.1.1 106054 1uqrA 154 38.15 c.23.13.1 99779 3cqyA 370 40.03 2iwnA 97 42.48 1eluA 390 45.33 c.67.1.3 34434 1elqA 390 46.20 c.67.1.3 34436 3bs5B 80 47.18 2zadA 345 48.68 3b6nA 187 49.06 2j0eA 266 49.83 3bs5A 106 52.77 2px0A 296 52.85 2f3nA 76 53.58 a.60.1.2 132885 1zpdA 568 54.52 c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 2ri0A 234 55.23 1jf9A 408 55.56 c.67.1.3 62931 2d0bA 310 55.79 1ofhA 310 56.64 c.37.1.20 86948 1ox6A 555 57.07 c.1.2.1,c.23.16.1 87505,87506 2z4sA 440 60.46 1pydA 556 62.11 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1h7eA 245 63.68 c.68.1.13 60717 1ekjA 221 63.76 c.53.2.1 33364 1kmkA 406 66.20 c.67.1.3 68696 1qhsA 178 66.80 c.37.1.3 31938 1io2A 213 69.24 c.55.3.1 62612 1ylkA 172 69.67 2c29D 337 73.24 1gggA 226 77.37 c.94.1.1 35817 2egxA 269 77.71 1ztcA 221 80.57 d.157.1.11 125635 1c0nA 406 81.16 c.67.1.3 34433 2hnkA 239 81.47 2egoA 96 84.56 1zckA 154 84.91 1qo0D 196 87.70 c.23.1.3 31125 2pwyA 258 89.02 1eg5A 384 89.45 c.67.1.3 34429 2ieaA 886 89.70 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296