# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oq2A	261	1.06e-30		
2goyA	275	1.17e-30		
1surA	215	2.30e-28	c.26.2.2	31620
1sur	215	1.63e-27		
1zunA	325	9.52e-24	c.26.2.2	125676
1wy5A	317	1.20e-05	c.26.2.5,d.229.1.1	121428,121429
1gpmA	525	6.48e-05	c.23.16.1,c.26.2.1,d.52.2.1	31405,31608,38826
1ni5A	433	6.83e-05	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
2pg3A	232	0.000555		
1xngA	268	0.000792	c.26.2.1	122186
2dplA	308	0.001021		
2e18A	257	0.001302		
2nsyA	271	0.01092	c.26.2.1	31612
1k92A	455	0.01413	c.26.2.1,d.210.1.1	68325,68326
1vl2A	421	0.03433	c.26.2.1,d.210.1.1	108708,108709
1ru8A	232	0.04443	c.26.2.1	97849
1kqpA	271	0.1165	c.26.2.1	72883
2hmaA	376	0.1420		
1korA	400	0.2702	c.26.2.1,d.210.1.1	72824,72825
1wxiA	275	0.2855	c.26.2.1	121400
1ne7A	289	0.3230	c.124.1.1	91833
2c5sA	413	0.4188	c.26.2.6,d.308.1.1	129950,129951
1fs5A	266	0.5239	c.124.1.1	65044
1m1zA	513	0.5948	c.26.2.1,d.153.1.1	78457,78458
1q15A	503	0.8050	c.26.2.1,d.153.1.1	95538,95539
2d13A	227	0.8298	c.26.2.1	131121
1vl1A	232	1.892	c.124.1.1	108707
1pbtA	244	2.572	c.124.1.1	94416
2bkxA	242	2.793		
3bn1A	373	3.101		
2c81A	418	3.580		
2fq6A	415	4.569	c.67.1.3	133939
1vl6A	388	6.383	c.2.1.7,c.58.1.3	108724,108725
2h6eA	344	7.253		
1y89A	238	8.345		
2cb1A	412	8.699		
3ch7A	266	9.057		
2g1kA	176	9.761	c.37.1.2	134519
3cssA	267	11.28		
1ct9A	553	11.50	c.26.2.1,d.153.1.1	31616,41834
2ogeA	399	13.39		
1iv3A	152	14.16	d.79.5.1	76828
1t0aA	159	14.58	d.79.5.1	112192
2f3nA	76	16.18	a.60.1.2	132885
3bs5A	106	16.54		
3cqyA	370	16.57		
1ofhA	310	18.30	c.37.1.20	86948
1b9hA	388	18.76	c.67.1.4	34488
1cl1A	395	19.44	c.67.1.3	34395
2b8tA	223	20.04	c.37.1.24,g.39.1.14	128109,128110
1gx1A	160	20.48	d.79.5.1	70675
1tlfA	301	24.30	c.93.1.1	35687
3bs5B	80	25.81		
3b6nA	187	26.49		
1cl2A	395	29.32	c.67.1.3	34397
2j0eA	266	32.81		
1uqrA	154	33.34	c.23.13.1	99779
1qhsA	178	34.65	c.37.1.3	31938
1lssA	140	35.14	c.2.1.9	74246
2ri0A	234	39.19		
2qgqA	304	39.63		
1h7eA	245	39.79	c.68.1.13	60717
1gtzA	156	40.36	c.23.13.1	70539
1qpbA	563	40.40	c.31.1.3,c.36.1.5,c.36.1.9	31739,31781,31782
2hnkA	239	46.64		
1jf9A	408	47.40	c.67.1.3	62931
1kmkA	406	47.82	c.67.1.3	68696
2qvcA	313	48.18		
1ox6A	555	50.54	c.1.2.1,c.23.16.1	87505,87506
2qt1A	207	51.07		
1io2A	213	52.64	c.55.3.1	62612
1vid	221	52.87		
2pwyA	258	54.43		
2egxA	269	55.02		
1c0nA	406	56.94	c.67.1.3	34433
2iwnA	97	59.12		
3c6qA	311	59.17		
1i6pA	220	63.44	c.53.2.1	61848
1ztcA	221	64.92	d.157.1.11	125635
2z4sA	440	65.74		
3bs7A	78	68.89		
2iyvA	184	70.26	c.37.1.2	137812
2gmsA	390	70.86		
2egoA	96	71.48		
1t3iA	420	71.99	c.67.1.3	106354
2f4mA	295	72.22		
1fyvA	161	72.31	c.23.2.1	31127
2hcfA	234	73.74	c.108.1.6	136333
1n0wA	243	74.56	c.37.1.11	79772
1pydA	556	77.05	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
2gpyA	233	77.56		
1p5sA	203	78.90	a.40.1.1	94147
1r1mA	164	79.09	d.79.7.1	96820
2ieaA	886	79.46	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
2rf4B	87	79.68		
2px0A	296	79.91		
1kw4A	89	82.03	a.60.1.2	73077
2ioyA	283	82.96		
1jbwA	428	85.02	c.59.1.2,c.72.2.2	62860,62861
2ywnA	157	85.14		
1elqA	390	87.81	c.67.1.3	34436
1pytA	94	89.51	d.58.3.1	39064