# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 4.07e-26 2goyA 275 5.49e-26 1surA 215 3.61e-24 c.26.2.2 31620 1sur 215 1.79e-23 1zunA 325 3.02e-20 c.26.2.2 125676 1wy5A 317 0.000100 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 0.000414 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1gpmA 525 0.000431 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2pg3A 232 0.002679 2dplA 308 0.004041 1xngA 268 0.004601 c.26.2.1 122186 2e18A 257 0.008224 1k92A 455 0.04039 c.26.2.1,d.210.1.1 68325,68326 2nsyA 271 0.04201 c.26.2.1 31612 1ru8A 232 0.08102 c.26.2.1 97849 1vl2A 421 0.09941 c.26.2.1,d.210.1.1 108708,108709 1kqpA 271 0.4604 c.26.2.1 72883 1korA 400 0.5619 c.26.2.1,d.210.1.1 72824,72825 2hmaA 376 0.6072 2c5sA 413 0.6582 c.26.2.6,d.308.1.1 129950,129951 1m1zA 513 0.8140 c.26.2.1,d.153.1.1 78457,78458 1wxiA 275 0.9273 c.26.2.1 121400 1ne7A 289 1.011 c.124.1.1 91833 1fs5A 266 1.258 c.124.1.1 65044 2d13A 227 1.455 c.26.2.1 131121 1q15A 503 1.617 c.26.2.1,d.153.1.1 95538,95539 1vl1A 232 2.995 c.124.1.1 108707 2bkxA 242 4.245 3bn1A 373 5.002 2h6eA 344 6.390 1pbtA 244 6.512 c.124.1.1 94416 2c81A 418 7.166 2cb1A 412 10.05 1y89A 238 11.69 2fq6A 415 12.16 c.67.1.3 133939 1ct9A 553 15.18 c.26.2.1,d.153.1.1 31616,41834 1iv3A 152 15.84 d.79.5.1 76828 1vl6A 388 16.04 c.2.1.7,c.58.1.3 108724,108725 3ch7A 266 18.28 1b9hA 388 18.50 c.67.1.4 34488 1t0aA 159 18.83 d.79.5.1 112192 1qpbA 563 19.54 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 3cssA 267 22.88 2ogeA 399 23.60 1gx1A 160 26.17 d.79.5.1 70675 1ofhA 310 26.47 c.37.1.20 86948 2g1kA 176 28.03 c.37.1.2 134519 3bs5B 80 29.12 3cqyA 370 29.55 2f3nA 76 29.56 a.60.1.2 132885 3bs5A 106 29.83 1tlfA 301 31.29 c.93.1.1 35687 2iwnA 97 31.62 2b8tA 223 31.86 c.37.1.24,g.39.1.14 128109,128110 1qhsA 178 34.30 c.37.1.3 31938 1gtzA 156 35.29 c.23.13.1 70539 1pydA 556 38.77 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1svvA 359 39.92 c.67.1.1 106054 1cl1A 395 44.16 c.67.1.3 34395 1ox6A 555 44.18 c.1.2.1,c.23.16.1 87505,87506 1kmkA 406 44.80 c.67.1.3 68696 3b6nA 187 44.98 1ztcA 221 47.03 d.157.1.11 125635 1lssA 140 49.02 c.2.1.9 74246 1jf9A 408 54.87 c.67.1.3 62931 1elqA 390 55.38 c.67.1.3 34436 1uqrA 154 58.10 c.23.13.1 99779 1c0nA 406 59.71 c.67.1.3 34433 1cl2A 395 59.72 c.67.1.3 34397 1i6pA 220 60.08 c.53.2.1 61848 1h7eA 245 63.11 c.68.1.13 60717 2egoA 96 67.02 2c29D 337 67.90 2qvcA 313 68.32 2pwyA 258 72.65 2qt1A 207 72.95 1eg5A 384 73.99 c.67.1.3 34429 1eluA 390 74.07 c.67.1.3 34434 1t3iA 420 74.95 c.67.1.3 106354 2ieaA 886 76.59 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 2j0eA 266 77.29 1io2A 213 79.27 c.55.3.1 62612 1g3qA 237 81.80 c.37.1.10 60237 3bs7A 78 83.04 1r1mA 164 83.34 d.79.7.1 96820 2d0bA 310 86.78 1iu9A 111 88.17 c.78.2.1 90694