# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2goyA 275 1.91e-37 2oq2A 261 1.18e-36 1surA 215 5.14e-33 c.26.2.2 31620 1sur 215 3.86e-32 1zunA 325 3.43e-26 c.26.2.2 125676 1wy5A 317 4.43e-07 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 4.43e-06 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2pg3A 232 9.42e-06 1xngA 268 3.23e-05 c.26.2.1 122186 1gpmA 525 3.91e-05 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2e18A 257 6.05e-05 2dplA 308 0.000497 2nsyA 271 0.000774 c.26.2.1 31612 1kqpA 271 0.01211 c.26.2.1 72883 1wxiA 275 0.03461 c.26.2.1 121400 1ru8A 232 0.04346 c.26.2.1 97849 2hmaA 376 0.06996 1vl2A 421 0.1271 c.26.2.1,d.210.1.1 108708,108709 1q15A 503 0.3849 c.26.2.1,d.153.1.1 95538,95539 1k92A 455 0.4028 c.26.2.1,d.210.1.1 68325,68326 2d13A 227 0.8060 c.26.2.1 131121 1pbtA 244 0.8120 c.124.1.1 94416 1m1zA 513 1.018 c.26.2.1,d.153.1.1 78457,78458 1vl1A 232 1.161 c.124.1.1 108707 2c5sA 413 1.232 c.26.2.6,d.308.1.1 129950,129951 2c81A 418 1.262 1korA 400 1.270 c.26.2.1,d.210.1.1 72824,72825 2zadA 345 1.339 1ne7A 289 1.662 c.124.1.1 91833 3bn1A 373 1.793 1fs5A 266 2.054 c.124.1.1 65044 1hozA 339 2.569 c.70.1.1 65898 2bkxA 242 2.682 1ct9A 553 3.051 c.26.2.1,d.153.1.1 31616,41834 3b9gA 328 3.648 1gm5A 780 5.604 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1kicA 339 5.722 c.70.1.1 72510 2g1kA 176 7.038 c.37.1.2 134519 1elqA 390 7.515 c.67.1.3 34436 2h6eA 344 8.135 1eluA 390 8.411 c.67.1.3 34434 1liiA 363 9.677 c.72.1.1 73921 1wotA 98 9.746 d.218.1.5 109470 1b9hA 388 9.891 c.67.1.4 34488 2og9A 393 11.09 1aopA 497 11.16 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1uufA 369 12.30 b.35.1.2,c.2.1.1 100006,100007 1bx4A 345 13.23 c.72.1.1 34935 3bkxA 275 14.14 1ofhA 310 15.12 c.37.1.20 86948 3b6nA 187 15.58 1mioA 534 15.99 c.92.2.3 35601 2cb1A 412 18.19 2h1qA 270 18.19 2absA 383 18.54 c.72.1.1 126534 1wk8A 194 19.46 1jflA 228 20.72 c.78.2.1,c.78.2.1 71656,71657 1dkuA 317 20.75 c.61.1.2,c.61.1.2 34118,34119 1svvA 359 20.94 c.67.1.1 106054 1ywfA 296 21.74 c.45.1.5 124144 1vi2A 300 21.91 c.2.1.7,c.58.1.5 100726,100727 1yoeA 322 22.15 2gmsA 390 22.31 1r1mA 164 22.84 d.79.7.1 96820 2dkhA 639 23.90 1c0nA 406 24.60 c.67.1.3 34433 1jpnA 296 26.96 a.24.13.1,c.37.1.10 67039,67040 1jf9A 408 28.08 c.67.1.3 62931 1tzzA 392 28.23 c.1.11.2,d.54.1.1 112896,112897 1y89A 238 28.36 1wnyA 186 29.25 3ldh 330 30.14 i.12.1.1 46015 1vefA 395 30.41 c.67.1.4 120018 1m32A 366 30.92 c.67.1.3 78508 1eg5A 384 31.19 c.67.1.3 34429 3c6qA 311 32.01 2qgyA 391 32.80 3ch7A 266 33.06 1dl5A 317 33.12 c.66.1.7,d.197.1.1 64720,64721 1tkkA 366 33.31 c.1.11.2,d.54.1.1 107089,107090 1mdlA 359 34.84 c.1.11.2,d.54.1.1 29247,38891 1iv3A 152 35.87 d.79.5.1 76828 1q8fA 313 37.67 c.70.1.1 96203 2fq6A 415 38.02 c.67.1.3 133939 1ac5 483 38.77 1ng1 294 38.92 1lldA 319 39.39 c.2.1.5,d.162.1.1 30177,42144 1suwA 249 40.05 e.52.1.1 106027 2nxfA 322 40.50 1mkyA 439 41.19 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2j2fA 363 41.96 1wpkA 146 43.22 1kmkA 406 43.67 c.67.1.3 68696 2egxA 269 44.77 1r1dA 247 45.39 c.69.1.29 96813 1d7uA 433 46.86 c.67.1.4 34439 1vm7A 311 47.81 c.72.1.1 108884 1ws6A 171 49.73 c.66.1.46 121222 1z0sA 278 51.52 e.52.1.1 124328 2gh1A 301 51.91 c.66.1.49 135170 1t0aA 159 52.80 d.79.5.1 112192 1ac5A 483 53.08 c.69.1.5 34653 1uxoA 192 54.76 c.69.1.31 108121 1ivyA 452 55.36 c.69.1.5 34654 1din 236 56.16 1ddzA 496 56.92 c.53.2.1,c.53.2.1 33372,33373 2jhfA 374 58.38 b.35.1.2,c.2.1.1 138314,138315 3cssA 267 58.96 2an1A 292 59.52 2qvcA 313 60.00 1yt5A 258 61.14 1sznA 417 61.17 b.71.1.1,c.1.8.1 106162,106163 1x9iA 302 62.05 c.80.1.1 114997 2ogeA 399 64.23 2cjgA 449 64.69 1dgmA 363 66.52 c.72.1.1 34936 1nu5A 370 67.43 c.1.11.2,d.54.1.1 92183,92184 2nqlA 388 69.30 1i7qB 193 71.26 c.23.16.1 61902 2g29A 417 72.00 1mucA 373 73.95 c.1.11.2,d.54.1.1 29236,38880 1ecxA 384 74.24 c.67.1.3 34431 2pjdA 343 75.77 2ax3A 502 76.42 c.72.1.4,c.104.1.1 127477,127478 1m2xA 223 77.27 d.157.1.1 84764 1sg6A 393 79.77 e.22.1.1 105522 1t3iA 420 81.98 c.67.1.3 106354 1w78A 422 82.31 1gx1A 160 82.73 d.79.5.1 70675 2c40A 312 86.42 1qx4A 274 86.66 b.43.4.2,c.25.1.1 104624,104625 3bdvA 191 87.96 1anfA 370 88.63 c.94.1.1 35776 2qjwA 176 88.82 1ug3A 339 89.62 a.118.1.14,a.118.1.14 119671,119672