# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2goyA 275 2.07e-30 2oq2A 261 2.07e-30 1surA 215 9.49e-28 c.26.2.2 31620 1sur 215 4.24e-27 1zunA 325 1.76e-22 c.26.2.2 125676 1wy5A 317 2.53e-05 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 2.85e-05 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2pg3A 232 0.000320 1gpmA 525 0.000542 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1xngA 268 0.001023 c.26.2.1 122186 2e18A 257 0.001449 2dplA 308 0.003734 2nsyA 271 0.007362 c.26.2.1 31612 1ru8A 232 0.03900 c.26.2.1 97849 1wxiA 275 0.09509 c.26.2.1 121400 1kqpA 271 0.1127 c.26.2.1 72883 1vl2A 421 0.1390 c.26.2.1,d.210.1.1 108708,108709 1m1zA 513 0.1696 c.26.2.1,d.153.1.1 78457,78458 1fs5A 266 0.1917 c.124.1.1 65044 1k92A 455 0.2021 c.26.2.1,d.210.1.1 68325,68326 1ne7A 289 0.2481 c.124.1.1 91833 1vl1A 232 0.3169 c.124.1.1 108707 1pbtA 244 0.5957 c.124.1.1 94416 2d13A 227 0.8648 c.26.2.1 131121 2hmaA 376 0.8981 1q15A 503 1.017 c.26.2.1,d.153.1.1 95538,95539 1korA 400 1.069 c.26.2.1,d.210.1.1 72824,72825 2c5sA 413 1.109 c.26.2.6,d.308.1.1 129950,129951 2bkxA 242 1.365 1eluA 390 3.342 c.67.1.3 34434 1elqA 390 3.348 c.67.1.3 34436 1y89A 238 3.745 3bn1A 373 4.842 1ct9A 553 5.153 c.26.2.1,d.153.1.1 31616,41834 2g1kA 176 5.485 c.37.1.2 134519 2c81A 418 5.890 1yzhA 214 6.734 c.66.1.53 124277 1pydA 556 8.769 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2egxA 269 9.562 1i7qB 193 10.55 c.23.16.1 61902 1jf9A 408 12.75 c.67.1.3 62931 3cssA 267 13.22 2qgqA 304 13.32 2zadA 345 14.81 1r1mA 164 15.19 d.79.7.1 96820 2cb1A 412 16.82 2gsaA 432 17.26 c.67.1.4 34446 3ch7A 266 17.28 1hozA 339 17.64 c.70.1.1 65898 1kmkA 406 17.93 c.67.1.3 68696 1b9hA 388 18.36 c.67.1.4 34488 1qpbA 563 18.70 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2pwyA 258 19.20 3b9gA 328 19.57 1c0nA 406 21.71 c.67.1.3 34433 2h6eA 344 24.20 1ofhA 310 25.07 c.37.1.20 86948 2j0eA 266 25.81 3ciwA 348 26.15 2bwnA 401 26.23 c.67.1.4 129368 1i1qB 192 26.29 c.23.16.1 61544 2gmsA 390 32.05 3bkxA 275 37.40 1t3iA 420 38.60 c.67.1.3 106354 1d7uA 433 39.10 c.67.1.4 34439 1kicA 339 40.96 c.70.1.1 72510 2h1qA 270 44.31 2iyvA 184 44.44 c.37.1.2 137812 1qo0D 196 44.62 c.23.1.3 31125 1sznA 417 45.62 b.71.1.1,c.1.8.1 106162,106163 2gh1A 301 46.58 c.66.1.49 135170 2qgyA 391 46.99 1eg5A 384 48.74 c.67.1.3 34429 1r1dA 247 48.96 c.69.1.29 96813 1iu9A 111 54.57 c.78.2.1 90694 1cl1A 395 56.51 c.67.1.3 34395 2qt1A 207 60.09 1mkyA 439 62.97 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2q71A 356 64.47 1vefA 395 65.09 c.67.1.4 120018 2fq6A 415 65.50 c.67.1.3 133939 3b6nA 187 73.27 2r8bA 251 74.13 2e9yA 316 75.12 2bkaA 242 76.41 c.2.1.2 128666 1sqsA 242 81.44 c.23.5.5 98968 2uytA 489 82.52