# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2goyA 275 2.80e-16 2oq2A 261 1.24e-15 1surA 215 1.87e-13 c.26.2.2 31620 1sur 215 3.09e-13 1zunA 325 5.14e-09 c.26.2.2 125676 1ni5A 433 0.006820 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2dplA 308 0.01779 1wy5A 317 0.04023 c.26.2.5,d.229.1.1 121428,121429 1xngA 268 0.09915 c.26.2.1 122186 1gpmA 525 0.0999 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2e18A 257 0.1164 2pg3A 232 0.5958 1wxiA 275 0.6092 c.26.2.1 121400 2nsyA 271 1.167 c.26.2.1 31612 1k92A 455 2.216 c.26.2.1,d.210.1.1 68325,68326 1kyzA 365 3.160 a.4.5.29,c.66.1.12 73312,73313 1ru8A 232 3.525 c.26.2.1 97849 1kqpA 271 5.679 c.26.2.1 72883 1xgkA 352 7.400 c.2.1.2 115286 1vb5A 276 7.778 c.124.1.5 113604 2dr1A 386 7.798 1fp1D 372 8.035 a.4.5.29,c.66.1.12 59939,59940 2pzmA 330 8.831 1ne7A 289 11.34 c.124.1.1 91833 1korA 400 11.59 c.26.2.1,d.210.1.1 72824,72825 2zadA 345 13.40 1fpqA 372 13.80 a.4.5.29,c.66.1.12 59947,59948 1vd6A 224 14.62 c.1.18.3 119991 1fs5A 266 15.54 c.124.1.1 65044 1vl1A 232 16.82 c.124.1.1 108707 2aeuA 374 16.92 c.67.1.8 126646 1yxyA 234 17.18 c.1.2.5 124203 1gq6A 313 18.11 c.42.1.1 70341 1z7yA 322 18.53 c.79.1.1 124679 1pbtA 244 18.59 c.124.1.1 94416 2reb 352 19.04 1vl2A 421 19.27 c.26.2.1,d.210.1.1 108708,108709 2p8bA 369 19.43 1rvkA 382 19.61 c.1.11.2,d.54.1.1 97928,97929 1bif 469 20.68 2oqhA 385 20.81 1wueA 386 21.15 c.1.11.2,d.54.1.1 114892,114893 1mdlA 359 21.27 c.1.11.2,d.54.1.1 29247,38891 1tkkA 366 21.97 c.1.11.2,d.54.1.1 107089,107090 2ef5A 290 22.37 2z9wA 392 22.50 2hmaA 376 23.20 2pgeA 377 23.74 1fpxA 352 27.19 a.4.5.29,c.66.1.12 59950,59951 3cssA 267 28.66 1bqg 451 29.43 1jpdX 324 29.89 c.1.11.2,d.54.1.1 67014,67015 1y89A 238 30.55 1fp2A 352 30.99 a.4.5.29,c.66.1.12 59941,59942 3bh0A 315 31.83 2pgwA 384 32.01 2jisA 515 32.10 2rebA 352 32.33 c.37.1.11,d.48.1.1 32282,38767 1ec7A 446 33.83 c.1.11.2,d.54.1.1 29218,38862 2hf9A 226 33.94 1g19A 350 34.05 c.37.1.11,d.48.1.1 32284,38770 1t3iA 420 34.17 c.67.1.3 106354 1fcjA 322 34.99 c.79.1.1 35289 2hlkA 255 35.72 1p3wA 404 35.98 c.67.1.3 87752 3ch7A 266 36.16 2gsaA 432 37.47 c.67.1.4 34446 1fp4A 492 38.57 c.92.2.3 76187 2c5sA 413 38.93 c.26.2.6,d.308.1.1 129950,129951 1eg5A 384 39.27 c.67.1.3 34429 1fnnA 389 42.11 a.4.5.11,c.37.1.20 16129,32426 1m1zA 513 43.19 c.26.2.1,d.153.1.1 78457,78458 2oz8A 389 43.34 2bkxA 242 44.01 2pz0A 252 45.62 1mdl 359 47.67 1oasA 322 48.15 c.79.1.1 35293 2ga9A 297 48.20 c.66.1.25 134885 1p9rA 418 49.01 c.37.1.11 94399 1iugA 352 50.25 c.67.1.3 90699 1kamA 194 50.29 c.26.1.3 72254 2qgyA 391 50.50 1tq8A 163 50.51 c.26.2.4 107204 1r0mA 375 51.07 c.1.11.2,d.54.1.1 104747,104748 2h29A 189 51.10 1nu5A 370 53.06 c.1.11.2,d.54.1.1 92183,92184 2vlbA 251 53.18 2dr3A 247 53.95 2a0uA 383 54.26 2hp1A 432 54.27 1din 236 55.10 1t5oA 351 55.37 c.124.1.5 106459 1oc2A 348 55.62 c.2.1.2 92765 1kagA 173 57.51 c.37.1.2 72249 2o56A 407 57.55 2pqmA 343 57.78 2d13A 227 58.42 c.26.2.1 131121 2e7jA 371 59.97 3ch0A 272 61.16 2gnpA 266 62.07 1svvA 359 63.81 c.67.1.1 106054 2j0eA 266 64.12 1ve1A 304 64.32 c.79.1.1 120007 2hy7A 406 64.91 2podA 410 65.89 1qydA 313 66.15 c.2.1.2 96583 1fhvA 323 66.52 c.1.11.2,d.54.1.1 29235,38879 1ub3A 220 66.78 c.1.10.1 88395 2gjcA 326 67.10 c.3.1.6 135280 1r6wA 322 67.42 c.1.11.2,d.54.1.1 97165,97166 2nqlA 388 68.07 1eluA 390 68.10 c.67.1.3 34434 2ovlA 371 69.80 2b8eA 273 70.18 c.108.1.7,d.220.1.1 128068,128069 2mnr 357 71.46 1y4iA 398 71.89 c.67.1.3 122619 2h6eA 344 73.40 1sb8A 352 74.32 c.2.1.2 105410 2rdxA 379 75.54 1y7lA 316 75.98 c.79.1.1 122695 1tdj 514 76.22 1twdA 256 78.24 c.1.30.1 107397 1ew2A 513 78.81 c.76.1.1 59525 2hzgA 401 79.25 1ecxA 384 79.97 c.67.1.3 34431 1j1iA 296 81.07 c.69.1.10 83977 2ox4A 403 81.79 2ah5A 210 82.82 c.108.1.6 126742 1o58A 303 82.83 c.79.1.1 92491 3bdiA 207 83.87 1c7gA 456 84.01 c.67.1.2 90415 2i33A 258 84.18 2r2nA 425 85.02 1kmkA 406 86.36 c.67.1.3 68696 2oodA 475 86.51 1y4hA 188 86.85 d.3.1.1 122615 2i1qA 322 87.10 a.60.4.1,c.37.1.11 136984,136985 2d0bA 310 87.31 2q3bA 313 89.59 3bzwA 274 89.76 1acmA 310 89.90 c.78.1.1,c.78.1.1 35180,35181