# List of top-scoring protein chains for T0395.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2goyA 275 8.44e-22 2dplA 308 3.51e-20 1zunA 325 5.40e-20 c.26.2.2 125676 2o8vA 252 1.66e-19 1gpmA 525 1.84e-18 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2ywbA 503 1.37e-17 2oq2A 261 3.32e-17 1surA 215 3.96e-17 c.26.2.2 31620 1wy5A 317 2.45e-15 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 1.52e-14 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2hmaA 376 2.70e-14 2pg3A 232 4.33e-14 2derA 380 1.67e-13 2c5sA 413 3.37e-13 c.26.2.6,d.308.1.1 129950,129951 2e18A 257 4.38e-13 1xngA 268 4.68e-11 c.26.2.1 122186 1korA 400 2.30e-09 c.26.2.1,d.210.1.1 72824,72825 2nz2A 413 2.05e-07 1kqpA 271 3.02e-07 c.26.2.1 72883 1wxiA 275 6.22e-07 c.26.2.1 121400 2pzbA 284 1.20e-06 1vl2A 421 1.11e-05 c.26.2.1,d.210.1.1 108708,108709 1k92A 455 0.000569 c.26.2.1,d.210.1.1 68325,68326 1m1zA 513 0.01026 c.26.2.1,d.153.1.1 78457,78458 1ct9A 553 0.01032 c.26.2.1,d.153.1.1 31616,41834 2d13A 227 0.01377 c.26.2.1 131121 1ru8A 232 0.03430 c.26.2.1 97849 1q15A 503 0.4712 c.26.2.1,d.153.1.1 95538,95539 1vp8A 201 1.749 c.49.1.2 113947 1vp4A 425 3.973 c.67.1.1 113935 2c72A 520 4.137 c.3.1.2,d.16.1.5 130018,130019 1xrjA 261 4.786 c.37.1.6 122256 2c76A 520 5.155 c.3.1.2,d.16.1.5 130030,130031 2c75A 520 5.471 c.3.1.2,d.16.1.5 130026,130027 1jmvA 141 5.537 c.26.2.4 66897 2bk5A 520 5.552 c.3.1.2,d.16.1.5 128656,128657 1s3eA 520 5.564 c.3.1.2,d.16.1.5 98426,98427 2dxnA 274 5.587 2c73A 520 5.724 c.3.1.2,d.16.1.5 130022,130023 1uj2A 252 5.817 c.37.1.6 99452 1rvgA 305 6.042 c.1.10.2 97920 2o2xA 218 6.479 1zvwA 378 9.739 1shlA 245 9.943 c.17.1.1 105556 2bpqA 373 10.24 1k88A 253 10.41 c.17.1.1 68290 1k86A 253 11.06 c.17.1.1 68288 1qg8A 255 11.74 c.68.1.1 34505 1y89A 238 12.71 1shjA 262 12.75 c.17.1.1 105554 2q02A 272 13.48 1gqfA 265 13.75 c.17.1.1 65470 1t1gA 364 14.82 c.41.1.2 106246 1i4oA 280 16.12 c.17.1.1 61721 2elcA 329 16.37 2pfsA 150 18.50 1t2fA 333 19.70 c.2.1.5,d.162.1.1 99088,99089 1zzmA 259 20.21 c.1.9.12 125911 1yvlA 683 21.29 1izcA 339 22.06 c.1.12.5 83838 1arbA 268 22.30 b.47.1.1 25766 1n0wA 243 23.54 c.37.1.11 79772 1i0zA 333 23.67 c.2.1.5,d.162.1.1 61495,61496 2nshA 169 25.55 1gpwA 253 25.73 c.1.2.1 65460 2nslA 169 26.51 1rhgA 174 27.93 a.26.1.1 16812 1thfD 253 28.05 c.1.2.1 28535 1cd9A 175 28.23 a.26.1.1 16815 1a2oA 349 29.46 c.23.1.1,c.40.1.1 31120,32479 2gcuA 245 29.57 2a0nA 265 30.20 c.1.2.1 125961 2pjmA 226 30.81 2oktA 342 31.12 1kbpA 432 31.32 b.1.12.1,d.159.1.1 22349,42068 5ldhA 333 31.44 c.2.1.5,d.162.1.1 30158,42125 1qczA 169 32.10 c.23.8.1 31276 2dg6A 222 33.36 2np5A 203 33.63 a.4.1.9,a.121.1.1 138424,138425 1vh7A 265 36.48 c.1.2.1 100646 1wpxA 421 37.09 c.69.1.5 121156 1fyhB 229 37.33 b.1.2.1,b.1.2.1 22055,22056 1d7aA 161 37.41 c.23.8.1 31277 1gncA 178 38.67 a.26.1.1 16821 1ua2A 346 39.69 d.144.1.7 113251 1nbwB 117 41.20 c.51.3.2 80396 1ffhA 294 43.32 a.24.13.1,c.37.1.10 16960,32271 2c03A 297 43.39 a.24.13.1,c.37.1.10 129566,129567 1rj9B 300 43.52 a.24.13.1,c.37.1.10 97555,97556 2ng1A 293 43.59 a.24.13.1,c.37.1.10 16962,32273 1yrwA 302 44.38 b.46.1.1,c.65.1.1 123942,123943 2iy3A 432 45.02 a.24.13.1,c.37.1.10 137790,137791 1f1jA 305 45.10 c.17.1.1 59596 2rkxA 255 45.29 1kmcA 303 45.34 c.17.1.1 68690 2bsnA 145 45.44 2v3cC 432 45.99 2blnA 305 46.01 b.46.1.1,c.65.1.1 128734,128735 2oap1 511 48.62 1ja0A 620 48.95 b.43.4.1,c.23.5.2,c.25.1.4 62798,62799,62800 1ub0A 258 49.05 c.72.1.2 88394 1auaA 296 49.62 a.5.3.1,c.13.1.1 16290,30882 2dpoA 319 50.50 1byfA 125 50.52 d.169.1.1 42419 1i10A 331 51.52 c.2.1.5,d.162.1.1 61499,61500 1j9zA 622 52.01 b.43.4.1,c.23.5.2,c.25.1.4 62792,62793,62794 9ldtA 331 52.05 c.2.1.5,d.162.1.1 30154,42121 1ursA 402 52.94 c.94.1.1 99833 2qjhA 273 53.39 2icjA 233 54.09 2z08A 137 55.66 2fjkA 305 57.22 2yrrA 353 57.50 1im4A 221 57.82 e.8.1.7 62581 1aj8A 371 58.88 a.103.1.1 18900 1v73A 342 59.15 2bg5A 324 59.15 2fupA 157 59.65 a.47.5.1 134184 1sioA 364 59.73 c.41.1.2 98888 1qmdA 370 60.68 a.124.1.1,b.12.1.3 19341,23649 1nijA 318 61.69 c.37.1.10,d.237.1.1 85741,85742 2dhoA 235 61.76 2a87A 335 62.63 3b8xA 390 63.58 1zvjA 364 64.32 1vlhA 173 64.55 c.26.1.3 108824 2r0tA 390 64.87 2rdqA 288 65.14 1amoA 615 65.16 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 2gmsA 390 66.28 1sjiA 350 67.31 1w1lA 560 68.40 d.58.32.1,d.145.1.1 109063,109064 2v0hA 456 69.34 2ffhA 425 69.69 a.24.13.1,a.36.1.1,c.37.1.10 16965,17122,32276 1t1iA 364 70.17 c.41.1.2 106248 1tlqA 189 71.17 a.195.1.1 107134 1j97A 211 71.39 c.108.1.4 62753 1l7pA 211 74.08 c.108.1.4 73670 1ja1A 622 74.41 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1cpyA 421 74.66 c.69.1.5 34651 2yz7A 260 75.42 1ox6A 555 76.17 c.1.2.1,c.23.16.1 87505,87506 1gt91 357 78.64 1h2vZ 156 79.16 d.58.7.1 76595 1urdA 370 80.25 c.94.1.1 99825 1xccA 220 80.86 c.47.1.10 115113 1ca1A 370 81.40 a.124.1.1,b.12.1.3 19340,23648 1o5wA 534 82.26 c.3.1.2,d.16.1.5 92520,92521 2ilxA 219 82.77 d.61.1.3 137499 2pk0A 250 83.41 2gvkA 317 85.67 d.58.4.14 135782 2j45A 297 89.34 a.24.13.1,c.37.1.10 137983,137984 1jpnA 296 89.55 a.24.13.1,c.37.1.10 67039,67040