# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 4.62e-18 1sur 215 4.18e-17 1surA 215 2.24e-16 c.26.2.2 31620 2goyA 275 5.34e-16 1zunA 325 1.27e-15 c.26.2.2 125676 2pg3A 232 2.67e-14 1wy5A 317 8.83e-13 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 2.66e-12 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xngA 268 4.87e-12 c.26.2.1 122186 2hmaA 376 5.38e-12 2dplA 308 2.58e-11 1k92A 455 3.21e-11 c.26.2.1,d.210.1.1 68325,68326 1vl2A 421 9.18e-11 c.26.2.1,d.210.1.1 108708,108709 1ru8A 232 1.41e-10 c.26.2.1 97849 1kqpA 271 3.65e-10 c.26.2.1 72883 1korA 400 4.97e-10 c.26.2.1,d.210.1.1 72824,72825 1gpmA 525 5.14e-10 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2e18A 257 2.66e-09 1wxiA 275 5.49e-09 c.26.2.1 121400 2c5sA 413 6.36e-09 c.26.2.6,d.308.1.1 129950,129951 2d13A 227 2.75e-07 c.26.2.1 131121 1q15A 503 5.04e-06 c.26.2.1,d.153.1.1 95538,95539 1m1zA 513 5.61e-06 c.26.2.1,d.153.1.1 78457,78458 1ct9A 553 0.000126 c.26.2.1,d.153.1.1 31616,41834 1vbkA 307 0.01174 c.26.2.6,d.308.1.1 119957,119958 2dxnA 274 0.1369 2qe6A 274 1.122 2ax3A 502 1.419 c.72.1.4,c.104.1.1 127477,127478 2nxfA 322 1.828 1kpgA 287 1.840 c.66.1.18 68735 2pfsA 150 2.022 1y8cA 246 2.191 c.66.1.43 116563 1l1eA 287 2.752 c.66.1.18 73454 1wznA 252 4.136 c.66.1.43 121525 2bw0A 329 4.229 b.46.1.1,c.65.1.1 129303,129304 2yqzA 263 4.538 2dumA 170 4.855 1fs5A 266 5.803 c.124.1.1 65044 1xtpA 254 6.701 c.66.1.42 116031 2fk8A 318 7.000 c.66.1.18 133648 2hy1A 280 7.411 1escA 306 7.814 c.23.10.1 31334 2gm3A 175 7.842 c.26.2.4 135354 2blnA 305 8.345 b.46.1.1,c.65.1.1 128734,128735 2a0nA 265 8.889 c.1.2.1 125961 2aotA 292 9.788 c.66.1.19 127098 1ve3A 227 9.799 c.66.1.43 120010 2dr3A 247 10.13 2z08A 137 10.34 1s3iA 310 10.38 b.46.1.1,c.65.1.1 98435,98436 1ne7A 289 11.06 c.124.1.1 91833 1t3iA 420 11.15 c.67.1.3 106354 2a22A 215 11.15 d.159.1.7 126025 1jf9A 408 11.66 c.67.1.3 62931 2cvhA 220 12.66 1a76 326 12.71 1w24A 182 12.76 d.159.1.7 120579 2bkxA 242 12.77 2bkwA 385 14.04 c.67.1.3 128714 2f8lA 344 14.17 c.66.1.45 133132 1jmvA 141 14.35 c.26.2.4 66897 1h5yA 253 14.42 c.1.2.1 65638 2d5cA 263 14.88 1vl5A 260 15.03 c.66.1.41 108720 1wyuA 438 15.48 c.67.1.7 121452 1wjgA 137 16.70 c.26.2.4 114696 1eluA 390 16.74 c.67.1.3 34434 1ss9A 311 16.81 c.68.1.4 105978 2gh1A 301 16.81 c.66.1.49 135170 1ga8A 311 17.23 c.68.1.4 34516 2gekA 406 20.42 1tq8A 163 21.19 c.26.2.4 107204 1xdzA 240 22.33 c.66.1.20 115196 1vl1A 232 23.17 c.124.1.1 108707 1zgdA 312 24.82 1xxlA 239 25.60 c.66.1.41 116203 2hnkA 239 25.75 1zodA 433 26.20 c.67.1.4 125437 2ex4A 241 28.66 c.66.1.42 132516 2gmsA 390 29.74 1ls1A 295 29.89 a.24.13.1,c.37.1.10 78170,78171 3bkwA 243 29.90 1eg5A 384 30.73 c.67.1.3 34429 1qwkA 317 31.51 c.1.7.1 96482 1wtaA 275 31.53 2cb1A 412 32.82 2o57A 297 33.26 1xm7A 195 33.46 d.159.1.8 115473 1b9hA 388 33.58 c.67.1.4 34488 1yzhA 214 34.85 c.66.1.53 124277 1x19A 359 35.68 2p8jA 209 35.85 1wy7A 207 35.94 c.66.1.32 121433 2fcaA 213 36.60 c.66.1.53 133262 1j8mF 297 37.22 a.24.13.1,c.37.1.10 62742,62743 1d2nA 272 37.29 c.37.1.20 32428 1yx1A 264 37.31 c.1.15.7 124169 1yzfA 195 37.41 c.23.10.5 124275 1wyuB 474 37.66 c.67.1.7 121453 2uxqA 402 37.80 3bkxA 275 37.93 2j0eA 266 38.25 1luaA 287 38.40 c.2.1.7,c.58.1.4 78216,78217 2pxxA 215 39.52 1v4vA 376 39.71 c.87.1.3 100313 1vp8A 201 40.11 c.49.1.2 113947 1nnwA 252 40.60 d.159.1.5 80674 3b9qA 302 44.33 1ri5A 298 44.74 c.66.1.34 97502 1y89A 238 45.10 2i6gA 199 45.13 c.66.1.44 137096 2h1rA 299 46.21 3ce9A 354 46.23 1p77A 272 46.38 c.2.1.7,c.58.1.5 94214,94215 1y4iA 398 47.65 c.67.1.3 122619 2ehhA 294 48.26 1qyrA 252 49.25 c.66.1.24 104657 1z2wA 192 51.89 d.159.1.7 124390 2ac7A 235 52.53 c.56.2.1 126543 1qamA 244 53.56 c.66.1.24 34220 2rfgA 297 53.83 2jfzA 255 54.22 1rvgA 305 54.65 c.1.10.2 97920 1dl5A 317 54.79 c.66.1.7,d.197.1.1 64720,64721 1jkxA 212 55.42 c.65.1.1 66813 2gnpA 266 56.74 3b3fA 341 57.69 1vhwA 253 59.97 c.56.2.1 100706 1jk7A 323 60.09 d.159.1.3 63144 1s95A 333 60.14 d.159.1.3 105375 3b9pA 297 62.62 1zu4A 320 63.11 1frb 315 63.27 1tjyA 316 63.39 c.93.1.1 107062 1wdnA 226 64.68 c.94.1.1 35816 2ieeA 271 65.20 1jvnA 555 65.44 c.1.2.1,c.23.16.1 67355,67356 2ywrA 216 66.03 1mjhA 162 66.16 c.26.2.4 31639 1a76A 326 66.37 a.60.7.1,c.120.1.2 18091,33361 1vlmA 219 67.14 c.66.1.41 108836 2dri 271 67.17 1v77A 212 67.24 c.6.3.2 108402 1mi3A 322 67.34 c.1.7.1 91274 1uteA 313 67.99 d.159.1.1 42078 1moqA 368 67.99 c.80.1.1 35302 2eq5A 228 68.03 2atsA 292 68.04 c.1.10.1 127306 2pocA 367 68.52 2fnaA 357 69.48 a.4.5.11,c.37.1.20 133809,133810 1v72A 356 69.55 c.67.1.1 119860 2q02A 272 70.22 1p3wA 404 73.40 c.67.1.3 87752 1odfA 290 73.45 c.37.1.6 92782 1zuaX 317 73.63 1tqjA 230 74.58 c.1.2.2 107228 3bn1A 373 75.73 1rxwA 336 75.93 a.60.7.1,c.120.1.2 98059,98060 2qytA 317 76.34 2okgA 255 77.01 2hdyA 440 77.08 1ta8A 332 77.61 d.142.2.2 112375 1k20A 310 78.69 c.107.1.1 68027 1v5xA 203 78.81 c.1.2.4 100377 2iswA 323 79.06 1f8rA 498 79.24 c.3.1.2,d.16.1.5 30410,37974 2amxA 376 79.71 c.1.9.1 127024 2a8yA 270 82.20 1v73A 342 82.30 1zx0A 236 82.96 c.66.1.16 125757 8abp 306 83.28 1lstA 239 83.75 c.94.1.1 35755 1u94A 356 84.66 c.37.1.11,d.48.1.1 107743,107744 2i5iA 263 85.03 1fmtA 314 85.17 b.46.1.1,c.65.1.1 25758,34174 2yvtA 260 86.26 1vi2A 300 87.39 c.2.1.7,c.58.1.5 100726,100727 1oc7A 364 87.52 c.6.1.1 86794 2cvjA 180 88.79 1jixA 351 89.05 c.87.1.1 63081 2qy9A 309 89.97