# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oq2A	261	2.90e-19		
1sur	215	4.52e-18		
1surA	215	2.69e-17	c.26.2.2	31620
2goyA	275	6.91e-17		
1zunA	325	9.74e-17	c.26.2.2	125676
2pg3A	232	6.19e-15		
1wy5A	317	4.79e-13	c.26.2.5,d.229.1.1	121428,121429
1ni5A	433	6.04e-13	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
1xngA	268	1.25e-12	c.26.2.1	122186
2hmaA	376	1.29e-12		
1k92A	455	4.79e-12	c.26.2.1,d.210.1.1	68325,68326
2dplA	308	5.13e-12		
1vl2A	421	3.06e-11	c.26.2.1,d.210.1.1	108708,108709
1ru8A	232	4.22e-11	c.26.2.1	97849
1kqpA	271	6.97e-11	c.26.2.1	72883
1korA	400	1.03e-10	c.26.2.1,d.210.1.1	72824,72825
1gpmA	525	1.99e-10	c.23.16.1,c.26.2.1,d.52.2.1	31405,31608,38826
1wxiA	275	6.94e-10	c.26.2.1	121400
2e18A	257	9.21e-10		
2c5sA	413	3.61e-09	c.26.2.6,d.308.1.1	129950,129951
2d13A	227	1.11e-07	c.26.2.1	131121
1m1zA	513	2.26e-06	c.26.2.1,d.153.1.1	78457,78458
1q15A	503	5.26e-06	c.26.2.1,d.153.1.1	95538,95539
1ct9A	553	4.58e-05	c.26.2.1,d.153.1.1	31616,41834
1vbkA	307	0.009390	c.26.2.6,d.308.1.1	119957,119958
2dxnA	274	0.1286		
2qe6A	274	0.6959		
2pfsA	150	1.353		
1kpgA	287	1.526	c.66.1.18	68735
2ax3A	502	1.867	c.72.1.4,c.104.1.1	127477,127478
2dumA	170	1.867		
2nxfA	322	2.568		
1l1eA	287	2.859	c.66.1.18	73454
1wznA	252	3.467	c.66.1.43	121525
1fs5A	266	3.588	c.124.1.1	65044
2bw0A	329	3.686	b.46.1.1,c.65.1.1	129303,129304
1y8cA	246	4.028	c.66.1.43	116563
2hy1A	280	4.231		
1a76	326	4.947		
1xtpA	254	6.010	c.66.1.42	116031
1escA	306	6.963	c.23.10.1	31334
2dr3A	247	7.549		
1ne7A	289	8.151	c.124.1.1	91833
2z08A	137	8.209		
1jf9A	408	8.362	c.67.1.3	62931
2blnA	305	9.169	b.46.1.1,c.65.1.1	128734,128735
1s3iA	310	9.562	b.46.1.1,c.65.1.1	98435,98436
1ve3A	227	9.575	c.66.1.43	120010
2yqzA	263	9.765		
2fk8A	318	9.896	c.66.1.18	133648
2a22A	215	10.32	d.159.1.7	126025
2bkxA	242	11.15		
1t3iA	420	11.59	c.67.1.3	106354
2bkwA	385	11.64	c.67.1.3	128714
2cvhA	220	12.63		
1wjgA	137	14.13	c.26.2.4	114696
1xdzA	240	14.59	c.66.1.20	115196
1tq8A	163	16.10	c.26.2.4	107204
1jmvA	141	16.87	c.26.2.4	66897
1eluA	390	16.88	c.67.1.3	34434
1zodA	433	17.06	c.67.1.4	125437
2aotA	292	17.97	c.66.1.19	127098
2gm3A	175	19.16	c.26.2.4	135354
1w24A	182	20.23	d.159.1.7	120579
1wyuA	438	21.76	c.67.1.7	121452
2uxqA	402	22.88		
2a0nA	265	22.90	c.1.2.1	125961
2gekA	406	23.02		
2j0eA	266	24.42		
1a76A	326	25.49	a.60.7.1,c.120.1.2	18091,33361
1rxwA	336	26.35	a.60.7.1,c.120.1.2	98059,98060
2ac7A	235	26.74	c.56.2.1	126543
1y89A	238	26.77		
1yzhA	214	27.88	c.66.1.53	124277
2gh1A	301	28.55	c.66.1.49	135170
1wtaA	275	28.80		
2d5cA	263	28.81		
1ga8A	311	30.65	c.68.1.4	34516
1d2nA	272	30.88	c.37.1.20	32428
1ls1A	295	31.29	a.24.13.1,c.37.1.10	78170,78171
1h5yA	253	31.85	c.1.2.1	65638
1nnwA	252	32.38	d.159.1.5	80674
2i6gA	199	32.56	c.66.1.44	137096
3bkxA	275	32.64		
2hnkA	239	33.84		
1x19A	359	34.02		
1eg5A	384	34.37	c.67.1.3	34429
2gmsA	390	34.70		
3bxoA	239	35.21		
1y4iA	398	35.26	c.67.1.3	122619
2hdyA	440	35.59		
1ri5A	298	36.40	c.66.1.34	97502
2ex4A	241	36.46	c.66.1.42	132516
2cb1A	412	36.67		
1p3wA	404	36.85	c.67.1.3	87752
1wyuB	474	37.19	c.67.1.7	121453
1b9hA	388	37.57	c.67.1.4	34488
1vl5A	260	38.12	c.66.1.41	108720
1qwkA	317	38.54	c.1.7.1	96482
1rvgA	305	40.26	c.1.10.2	97920
2p8jA	209	40.98		
1vl1A	232	41.33	c.124.1.1	108707
1uteA	313	41.72	d.159.1.1	42078
1vp8A	201	41.98	c.49.1.2	113947
1y9aA	360	42.03		
1jvnA	555	42.09	c.1.2.1,c.23.16.1	67355,67356
3b3fA	341	42.16		
1zgdA	312	42.62		
2jfzA	255	43.36		
1yzfA	195	43.36	c.23.10.5	124275
2pxxA	215	43.64		
3ce9A	354	45.17		
2ieeA	271	45.31		
1p77A	272	45.88	c.2.1.7,c.58.1.5	94214,94215
1yx1A	264	47.39	c.1.15.7	124169
1ss9A	311	47.87	c.68.1.4	105978
2amxA	376	48.02	c.1.9.1	127024
1j8mF	297	48.05	a.24.13.1,c.37.1.10	62742,62743
1s95A	333	48.20	d.159.1.3	105375
2o3hA	285	49.10		
1fmtA	314	49.26	b.46.1.1,c.65.1.1	25758,34174
2pocA	367	49.77		
1vhwA	253	50.24	c.56.2.1	100706
2f8lA	344	50.28	c.66.1.45	133132
1oc7A	364	50.36	c.6.1.1	86794
2iswA	323	52.85		
2eq5A	228	53.18		
2yvtA	260	54.34		
1jflA	228	54.46	c.78.2.1,c.78.2.1	71656,71657
1vjoA	393	55.17	c.67.1.3	100827
1moqA	368	55.65	c.80.1.1	35302
3bn1A	373	56.65		
1wy7A	207	58.15	c.66.1.32	121433
1ir6A	424	58.66	c.107.1.2	71342
1v73A	342	59.48		
1xm7A	195	60.27	d.159.1.8	115473
1v4vA	376	60.41	c.87.1.3	100313
2ehhA	294	61.89		
2o57A	297	62.19		
2a8yA	270	64.01		
2vchA	480	65.13		
2douA	376	65.21		
2fnaA	357	66.45	a.4.5.11,c.37.1.20	133809,133810
1m1nA	491	67.20	c.92.2.3	78417
2jisA	515	67.25		
1odfA	290	68.31	c.37.1.6	92782
2ri0A	234	68.58		
3bkwA	243	68.81		
1dl5A	317	70.25	c.66.1.7,d.197.1.1	64720,64721
2gnpA	266	71.05		
1z2wA	192	71.08	d.159.1.7	124390
1xxlA	239	71.11	c.66.1.41	116203
2okgA	255	72.18		
1jk7A	323	72.18	d.159.1.3	63144
2nuwA	288	73.11		
1luaA	287	73.27	c.2.1.7,c.58.1.4	78216,78217
1g2qA	187	73.70	c.61.1.1	65117
1zu4A	320	75.07		
2rfgA	297	75.34		
1v5xA	203	75.58	c.1.2.4	100377
1hslA	238	77.74	c.94.1.1	35804
1jkxA	212	78.23	c.65.1.1	66813
1j5xA	342	78.34	c.80.1.1	71591
2hufA	393	79.75		
1ta8A	332	80.26	d.142.2.2	112375
1f74A	293	80.37	c.1.10.1	29079
1frb	315	80.48		
1u94A	356	81.30	c.37.1.11,d.48.1.1	107743,107744
2ywrA	216	81.40		
2h1rA	299	81.94		
1yumA	242	82.52		
1qamA	244	82.62	c.66.1.24	34220
1vlmA	219	82.99	c.66.1.41	108836
2nwrA	267	83.31		
1usgA	346	83.51	c.93.1.1	99864
1yixA	265	83.81	c.1.9.12	123371
1nytA	271	83.84	c.2.1.7,c.58.1.5	86417,86418
2gdjA	264	84.34	c.37.1.11	135018
1v77A	212	85.43	c.6.3.2	108402
2bsxA	253	85.65	c.56.2.1	129128
2cvjA	180	85.94		
1zuaX	317	86.21		
1jysA	242	87.39	c.56.2.1	77216
2gzxA	265	87.53		
3b89A	252	87.93		
1zosA	230	88.35		
3b9qA	302	88.56		
1us0A	316	88.96	c.1.7.1	99850