# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 2.46e-19 1sur 215 1.60e-18 1surA 215 8.19e-18 c.26.2.2 31620 2goyA 275 3.61e-17 1zunA 325 1.89e-16 c.26.2.2 125676 2pg3A 232 5.17e-15 1wy5A 317 2.24e-13 c.26.2.5,d.229.1.1 121428,121429 1xngA 268 9.89e-13 c.26.2.1 122186 2hmaA 376 2.59e-12 1ni5A 433 2.92e-12 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2dplA 308 5.28e-12 1k92A 455 7.91e-12 c.26.2.1,d.210.1.1 68325,68326 1kqpA 271 4.96e-11 c.26.2.1 72883 1ru8A 232 6.96e-11 c.26.2.1 97849 1vl2A 421 7.80e-11 c.26.2.1,d.210.1.1 108708,108709 1gpmA 525 2.75e-10 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1korA 400 2.77e-10 c.26.2.1,d.210.1.1 72824,72825 2e18A 257 8.06e-10 1wxiA 275 8.35e-10 c.26.2.1 121400 2c5sA 413 7.03e-09 c.26.2.6,d.308.1.1 129950,129951 2d13A 227 3.94e-07 c.26.2.1 131121 1q15A 503 1.16e-05 c.26.2.1,d.153.1.1 95538,95539 1m1zA 513 1.41e-05 c.26.2.1,d.153.1.1 78457,78458 1ct9A 553 7.07e-05 c.26.2.1,d.153.1.1 31616,41834 1vbkA 307 0.01707 c.26.2.6,d.308.1.1 119957,119958 2dxnA 274 0.4164 1y8cA 246 1.103 c.66.1.43 116563 2pfsA 150 1.725 1kpgA 287 2.091 c.66.1.18 68735 1l1eA 287 3.895 c.66.1.18 73454 2ax3A 502 4.041 c.72.1.4,c.104.1.1 127477,127478 2qe6A 274 4.259 2nxfA 322 5.114 1fs5A 266 5.340 c.124.1.1 65044 1a76 326 5.521 2z08A 137 5.583 2fk8A 318 5.876 c.66.1.18 133648 2dumA 170 6.083 1jf9A 408 6.379 c.67.1.3 62931 1tq8A 163 6.380 c.26.2.4 107204 1wznA 252 7.211 c.66.1.43 121525 1t3iA 420 7.579 c.67.1.3 106354 2gmsA 390 8.363 2bkxA 242 10.33 1wyuA 438 10.40 c.67.1.7 121452 1wjgA 137 10.75 c.26.2.4 114696 1v4vA 376 10.88 c.87.1.3 100313 1xtpA 254 11.01 c.66.1.42 116031 2aotA 292 11.94 c.66.1.19 127098 1vl5A 260 13.41 c.66.1.41 108720 2dr3A 247 13.67 1m7yA 435 14.04 c.67.1.4 78761 1jmvA 141 14.68 c.26.2.4 66897 2gh1A 301 15.02 c.66.1.49 135170 2qy9A 309 15.77 2yqzA 263 16.91 2cvhA 220 17.04 2gm3A 175 17.15 c.26.2.4 135354 2blnA 305 17.39 b.46.1.1,c.65.1.1 128734,128735 2bkwA 385 17.52 c.67.1.3 128714 1xxlA 239 18.11 c.66.1.41 116203 1ne7A 289 18.72 c.124.1.1 91833 1eluA 390 19.39 c.67.1.3 34434 1ta8A 332 19.84 d.142.2.2 112375 2hy1A 280 20.23 1xdzA 240 20.31 c.66.1.20 115196 2bw0A 329 21.20 b.46.1.1,c.65.1.1 129303,129304 2fcaA 213 21.20 c.66.1.53 133262 2cb1A 412 21.51 3b9qA 302 22.11 1eg5A 384 23.07 c.67.1.3 34429 2a0nA 265 23.20 c.1.2.1 125961 1rxwA 336 23.37 a.60.7.1,c.120.1.2 98059,98060 1gdeA 389 23.83 c.67.1.1 60456 1escA 306 24.43 c.23.10.1 31334 1y4iA 398 27.28 c.67.1.3 122619 1tqjA 230 27.51 c.1.2.2 107228 1vp8A 201 28.15 c.49.1.2 113947 1d2nA 272 30.33 c.37.1.20 32428 1yzfA 195 30.44 c.23.10.5 124275 1ls1A 295 30.52 a.24.13.1,c.37.1.10 78170,78171 2q02A 272 30.56 1yx1A 264 30.58 c.1.15.7 124169 1nnwA 252 31.05 d.159.1.5 80674 3ce9A 354 31.94 1x19A 359 32.36 3bxoA 239 32.62 3bkxA 275 33.03 1yzhA 214 33.32 c.66.1.53 124277 1a76A 326 34.45 a.60.7.1,c.120.1.2 18091,33361 3bkwA 243 34.65 2hnkA 239 34.96 1vl1A 232 35.12 c.124.1.1 108707 3caiA 406 35.52 1ve3A 227 36.89 c.66.1.43 120010 1wstA 417 36.97 c.67.1.1 121244 2douA 376 38.17 1j32A 388 38.23 c.67.1.1 77067 2f8lA 344 38.57 c.66.1.45 133132 2ac7A 235 38.86 c.56.2.1 126543 3bn1A 373 41.08 2d5cA 263 42.15 2ex4A 241 42.51 c.66.1.42 132516 2pocA 367 43.47 1h5yA 253 43.98 c.1.2.1 65638 1j8mF 297 46.44 a.24.13.1,c.37.1.10 62742,62743 1v2dA 381 46.55 c.67.1.1 108281 1zodA 433 46.66 c.67.1.4 125437 1s3iA 310 46.86 b.46.1.1,c.65.1.1 98435,98436 1v77A 212 46.88 c.6.3.2 108402 1wtaA 275 47.09 1v72A 356 47.21 c.67.1.1 119860 8abp 306 48.13 1zgdA 312 49.46 1wy7A 207 49.54 c.66.1.32 121433 1wyuB 474 50.87 c.67.1.7 121453 1qwkA 317 50.88 c.1.7.1 96482 2gzxA 265 53.53 1ivnA 190 53.60 c.23.10.5 83719 2a8yA 270 54.18 3b8xA 390 54.27 2g0wA 296 54.52 c.1.15.4 134503 1vhwA 253 55.59 c.56.2.1 100706 1b9hA 388 55.69 c.67.1.4 34488 1n0wA 243 56.44 c.37.1.11 79772 1y89A 238 56.74 2eq5A 228 56.82 2j6vA 301 59.39 1moqA 368 60.58 c.80.1.1 35302 1mjhA 162 60.74 c.26.2.4 31639 2o57A 297 60.97 1kmkA 406 62.32 c.67.1.3 68696 1b5pA 385 62.49 c.67.1.1 90403 1qyrA 252 62.56 c.66.1.24 104657 1tjyA 316 63.75 c.93.1.1 107062 2a22A 215 64.08 d.159.1.7 126025 1ri5A 298 64.43 c.66.1.34 97502 2gekA 406 64.81 1rkbA 173 65.19 c.37.1.1 111854 2qytA 317 65.83 1lssA 140 66.34 c.2.1.9 74246 2i6gA 199 66.64 c.66.1.44 137096 1jysA 242 66.87 c.56.2.1 77216 1p3wA 404 67.43 c.67.1.3 87752 1mdoA 393 67.57 c.67.1.4 79013 1p77A 272 68.05 c.2.1.7,c.58.1.5 94214,94215 2fnaA 357 69.17 a.4.5.11,c.37.1.20 133809,133810 2h1rA 299 70.49 1uteA 313 70.53 d.159.1.1 42078 2yvtA 260 70.85 2p8jA 209 71.39 1jvnA 555 71.62 c.1.2.1,c.23.16.1 67355,67356 1luaA 287 72.01 c.2.1.7,c.58.1.4 78216,78217 2ieeA 271 72.65 1e0tA 470 72.89 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1ars 396 72.96 2ehhA 294 73.69 2i5iA 263 74.09 1zu4A 320 74.96 1w24A 182 75.72 d.159.1.7 120579 2iswA 323 77.41 1b43A 340 77.79 a.60.7.1,c.120.1.2 18092,33362 1gz0A 253 78.01 c.116.1.1,d.79.3.3 76391,76392 1us0A 316 78.65 c.1.7.1 99850 1xi9A 406 78.89 c.67.1.1 115355 2zg5A 397 79.90 1im8A 244 80.06 c.66.1.14 66212 1ss9A 311 80.16 c.68.1.4 105978 1vkcA 158 80.30 d.108.1.1 113663 1jqlB 140 81.23 c.37.1.20 63234 2ip2A 334 82.59 8abpA 306 82.68 c.93.1.1 35647 1qg8A 255 83.66 c.68.1.1 34505 2j0eA 266 83.86 1i60A 278 84.52 c.1.15.4 71118 1vjoA 393 84.58 c.67.1.3 100827 1u94A 356 84.87 c.37.1.11,d.48.1.1 107743,107744 2dri 271 85.27 3c3jA 384 85.30 1j6oA 268 85.47 c.1.9.12 77088 1jflA 228 86.96 c.78.2.1,c.78.2.1 71656,71657 1mi3A 322 88.38 c.1.7.1 91274 1yixA 265 88.92 c.1.9.12 123371 1f0kA 364 89.20 c.87.1.2 35465 1ga8A 311 89.47 c.68.1.4 34516 1dl5A 317 89.86 c.66.1.7,d.197.1.1 64720,64721