# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oq2A	261	2.89e-21		
1sur	215	4.69e-20		
1surA	215	2.41e-19	c.26.2.2	31620
2goyA	275	1.22e-18		
1zunA	325	1.02e-17	c.26.2.2	125676
2pg3A	232	1.87e-16		
1wy5A	317	6.23e-15	c.26.2.5,d.229.1.1	121428,121429
1xngA	268	2.40e-14	c.26.2.1	122186
1ni5A	433	7.24e-14	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
2hmaA	376	1.59e-13		
2dplA	308	6.90e-13		
1k92A	455	1.29e-12	c.26.2.1,d.210.1.1	68325,68326
1kqpA	271	3.59e-12	c.26.2.1	72883
1vl2A	421	5.01e-12	c.26.2.1,d.210.1.1	108708,108709
1ru8A	232	1.21e-11	c.26.2.1	97849
1korA	400	2.47e-11	c.26.2.1,d.210.1.1	72824,72825
1gpmA	525	3.28e-11	c.23.16.1,c.26.2.1,d.52.2.1	31405,31608,38826
2e18A	257	6.22e-11		
1wxiA	275	1.15e-10	c.26.2.1	121400
2c5sA	413	5.14e-10	c.26.2.6,d.308.1.1	129950,129951
2d13A	227	4.88e-08	c.26.2.1	131121
1q15A	503	6.82e-07	c.26.2.1,d.153.1.1	95538,95539
1m1zA	513	1.65e-06	c.26.2.1,d.153.1.1	78457,78458
1ct9A	553	3.82e-05	c.26.2.1,d.153.1.1	31616,41834
1vbkA	307	0.006170	c.26.2.6,d.308.1.1	119957,119958
2dxnA	274	0.07139		
2nxfA	322	1.025		
2qe6A	274	1.502		
2ax3A	502	2.163	c.72.1.4,c.104.1.1	127477,127478
1fs5A	266	2.287	c.124.1.1	65044
1kpgA	287	2.324	c.66.1.18	68735
2dumA	170	2.364		
1l1eA	287	2.638	c.66.1.18	73454
1y8cA	246	2.954	c.66.1.43	116563
2pfsA	150	3.074		
1a76	326	3.518		
2gekA	406	5.004		
1escA	306	5.112	c.23.10.1	31334
2yqzA	263	5.339		
2fk8A	318	5.578	c.66.1.18	133648
2bkxA	242	5.900		
1ne7A	289	7.539	c.124.1.1	91833
1wznA	252	7.543	c.66.1.43	121525
1v4vA	376	8.570	c.87.1.3	100313
1xtpA	254	8.857	c.66.1.42	116031
2a0nA	265	9.207	c.1.2.1	125961
2hy1A	280	9.505		
2bw0A	329	9.765	b.46.1.1,c.65.1.1	129303,129304
1h5yA	253	10.09	c.1.2.1	65638
2aotA	292	10.31	c.66.1.19	127098
2z08A	137	10.36		
2f8lA	344	10.54	c.66.1.45	133132
1y89A	238	10.89		
2d5cA	263	11.03		
2blnA	305	11.96	b.46.1.1,c.65.1.1	128734,128735
1tq8A	163	12.13	c.26.2.4	107204
2bkwA	385	13.15	c.67.1.3	128714
1t3iA	420	13.95	c.67.1.3	106354
2gm3A	175	14.71	c.26.2.4	135354
1b9hA	388	14.89	c.67.1.4	34488
2a22A	215	15.75	d.159.1.7	126025
1vl1A	232	16.06	c.124.1.1	108707
1wjgA	137	16.40	c.26.2.4	114696
1yx1A	264	16.42	c.1.15.7	124169
1ss9A	311	17.30	c.68.1.4	105978
1xdzA	240	17.78	c.66.1.20	115196
2gmsA	390	18.26		
2cvhA	220	20.28		
1jmvA	141	20.47	c.26.2.4	66897
1eluA	390	21.31	c.67.1.3	34434
1zodA	433	22.27	c.67.1.4	125437
1d2nA	272	23.18	c.37.1.20	32428
2dr3A	247	24.47		
1jf9A	408	24.68	c.67.1.3	62931
2ac7A	235	24.99	c.56.2.1	126543
1yzhA	214	25.03	c.66.1.53	124277
1wtaA	275	25.57		
2q02A	272	26.27		
1ga8A	311	27.00	c.68.1.4	34516
2hnkA	239	27.77		
1wyuA	438	27.80	c.67.1.7	121452
2j0eA	266	28.97		
2o57A	297	30.00		
3b9qA	302	30.72		
2qytA	317	31.08		
1ta8A	332	32.55	d.142.2.2	112375
1w24A	182	33.50	d.159.1.7	120579
2cb1A	412	33.65		
3ce9A	354	34.19		
1vp8A	201	35.42	c.49.1.2	113947
3bkwA	243	35.49		
1a76A	326	36.48	a.60.7.1,c.120.1.2	18091,33361
1wdnA	226	39.22	c.94.1.1	35816
2ieeA	271	39.76		
1vl5A	260	40.24	c.66.1.41	108720
2pocA	367	40.36		
1x19A	359	40.89		
2qy9A	309	42.00		
1wwzA	159	42.20	d.108.1.1	121380
2q8uA	336	42.44		
2eq5A	228	42.65		
2q0yA	153	42.72		
3b9pA	297	44.35		
1p77A	272	45.34	c.2.1.7,c.58.1.5	94214,94215
1vkcA	158	45.74	d.108.1.1	113663
1mjhA	162	46.63	c.26.2.4	31639
1wy7A	207	49.09	c.66.1.32	121433
1ir6A	424	49.67	c.107.1.2	71342
2nq2C	253	50.56		
2uxqA	402	53.12		
1s3iA	310	54.10	b.46.1.1,c.65.1.1	98435,98436
1jvnA	555	54.68	c.1.2.1,c.23.16.1	67355,67356
2gh1A	301	56.04	c.66.1.49	135170
2dri	271	56.36		
2jfzA	255	57.13		
2p8jA	209	57.26		
1moqA	368	57.31	c.80.1.1	35302
2gzxA	265	57.35		
3bn1A	373	57.54		
2pxxA	215	58.01		
1yzfA	195	58.95	c.23.10.5	124275
3beoA	375	60.53		
1ve3A	227	60.66	c.66.1.43	120010
1jysA	242	61.04	c.56.2.1	77216
2ex4A	241	61.14	c.66.1.42	132516
1luaA	287	62.42	c.2.1.7,c.58.1.4	78216,78217
1qjcA	158	62.85	c.26.1.3	63328
2douA	376	63.32		
1xxlA	239	63.91	c.66.1.41	116203
1qwkA	317	64.42	c.1.7.1	96482
1nnwA	252	65.38	d.159.1.5	80674
1vhwA	253	65.41	c.56.2.1	100706
1ls1A	295	65.46	a.24.13.1,c.37.1.10	78170,78171
2ehhA	294	66.66		
2a40B	260	66.74	d.151.1.1	126139
1uteA	313	67.03	d.159.1.1	42078
1lc5A	364	67.16	c.67.1.1	73827
1m7yA	435	67.25	c.67.1.4	78761
2okgA	255	68.03		
1gdeA	389	68.30	c.67.1.1	60456
1rxwA	336	68.62	a.60.7.1,c.120.1.2	98059,98060
1zu4A	320	69.67		
2a8yA	270	69.91		
1lstA	239	72.45	c.94.1.1	35755
1ri5A	298	73.29	c.66.1.34	97502
1jixA	351	74.05	c.87.1.1	63081
1hslA	238	74.53	c.94.1.1	35804
2rfgA	297	74.58		
1muwA	386	76.62	c.1.15.3	79495
1i60A	278	77.07	c.1.15.4	71118
2jisA	515	78.19		
1zx0A	236	78.28	c.66.1.16	125757
1j8mF	297	78.97	a.24.13.1,c.37.1.10	62742,62743
1u94A	356	79.13	c.37.1.11,d.48.1.1	107743,107744
1qyrA	252	81.03	c.66.1.24	104657
2i6gA	199	81.06	c.66.1.44	137096
1j5xA	342	81.59	c.80.1.1	71591
2rebA	352	81.74	c.37.1.11,d.48.1.1	32282,38767
1mdoA	393	81.91	c.67.1.4	79013
2fcaA	213	81.96	c.66.1.53	133262
1o5kA	306	82.22	c.1.10.1	92504
8abpA	306	82.40	c.93.1.1	35647
2r7hA	177	82.86		
1vzwA	244	83.27	c.1.2.1	120553
1v77A	212	84.41	c.6.3.2	108402
1pyoA	167	84.75	c.17.1.1	95370
1b5pA	385	84.86	c.67.1.1	90403
2g0wA	296	84.92	c.1.15.4	134503
2h00A	254	85.22	c.66.1.54	135925
1jsxA	207	85.33	c.66.1.20	71846
1t8sA	484	86.52	c.56.2.1	106679
1wyuB	474	86.88	c.67.1.7	121453
2o3hA	285	86.98		
2hc9A	491	87.06		
2i5iA	263	87.82		
2p67A	341	89.41