# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oq2A	261	2.01e-20		
1sur	215	2.62e-19		
1surA	215	1.42e-18	c.26.2.2	31620
2goyA	275	6.18e-18		
1zunA	325	4.05e-17	c.26.2.2	125676
2pg3A	232	6.06e-16		
1wy5A	317	1.58e-14	c.26.2.5,d.229.1.1	121428,121429
1xngA	268	8.91e-14	c.26.2.1	122186
1ni5A	433	2.16e-13	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
2hmaA	376	3.78e-13		
1k92A	455	1.88e-12	c.26.2.1,d.210.1.1	68325,68326
2dplA	308	1.96e-12		
1kqpA	271	9.67e-12	c.26.2.1	72883
1vl2A	421	9.94e-12	c.26.2.1,d.210.1.1	108708,108709
1ru8A	232	2.40e-11	c.26.2.1	97849
1korA	400	5.70e-11	c.26.2.1,d.210.1.1	72824,72825
1gpmA	525	1.00e-10	c.23.16.1,c.26.2.1,d.52.2.1	31405,31608,38826
2e18A	257	1.02e-10		
1wxiA	275	2.77e-10	c.26.2.1	121400
2c5sA	413	8.63e-10	c.26.2.6,d.308.1.1	129950,129951
2d13A	227	6.42e-08	c.26.2.1	131121
1q15A	503	1.14e-06	c.26.2.1,d.153.1.1	95538,95539
1m1zA	513	2.46e-06	c.26.2.1,d.153.1.1	78457,78458
1ct9A	553	6.27e-05	c.26.2.1,d.153.1.1	31616,41834
1vbkA	307	0.007016	c.26.2.6,d.308.1.1	119957,119958
2dxnA	274	0.07406		
2nxfA	322	0.9158		
2qe6A	274	1.375		
2ax3A	502	1.900	c.72.1.4,c.104.1.1	127477,127478
1y8cA	246	2.447	c.66.1.43	116563
2dumA	170	2.639		
1kpgA	287	2.845	c.66.1.18	68735
1fs5A	266	2.882	c.124.1.1	65044
2pfsA	150	3.195		
1l1eA	287	3.205	c.66.1.18	73454
2bkxA	242	5.710		
1wznA	252	5.722	c.66.1.43	121525
1a76	326	5.872		
1escA	306	6.480	c.23.10.1	31334
2hy1A	280	6.869		
2gekA	406	6.883		
2yqzA	263	6.894		
2fk8A	318	6.964	c.66.1.18	133648
1ne7A	289	7.559	c.124.1.1	91833
2d5cA	263	9.068		
2a0nA	265	9.118	c.1.2.1	125961
1xtpA	254	9.284	c.66.1.42	116031
2f8lA	344	9.287	c.66.1.45	133132
2aotA	292	9.295	c.66.1.19	127098
2z08A	137	9.496		
1y89A	238	9.99		
1h5yA	253	10.52	c.1.2.1	65638
1v4vA	376	10.94	c.87.1.3	100313
2blnA	305	11.01	b.46.1.1,c.65.1.1	128734,128735
2bw0A	329	11.40	b.46.1.1,c.65.1.1	129303,129304
2a22A	215	11.56	d.159.1.7	126025
2gm3A	175	12.49	c.26.2.4	135354
1xdzA	240	14.28	c.66.1.20	115196
1vl1A	232	14.91	c.124.1.1	108707
1tq8A	163	15.11	c.26.2.4	107204
1yx1A	264	15.42	c.1.15.7	124169
1wjgA	137	15.67	c.26.2.4	114696
1b9hA	388	15.73	c.67.1.4	34488
2bkwA	385	16.21	c.67.1.3	128714
1t3iA	420	18.16	c.67.1.3	106354
1ss9A	311	19.65	c.68.1.4	105978
1vp8A	201	21.16	c.49.1.2	113947
1yzhA	214	21.18	c.66.1.53	124277
1wtaA	275	21.26		
1jf9A	408	23.72	c.67.1.3	62931
1jmvA	141	24.52	c.26.2.4	66897
2o57A	297	24.75		
1ta8A	332	25.01	d.142.2.2	112375
1eluA	390	25.74	c.67.1.3	34434
2gmsA	390	26.01		
1ga8A	311	26.29	c.68.1.4	34516
2dr3A	247	26.53		
2q02A	272	27.00		
2hnkA	239	27.54		
1w24A	182	28.21	d.159.1.7	120579
2qytA	317	29.07		
2ac7A	235	29.17	c.56.2.1	126543
1d2nA	272	29.59	c.37.1.20	32428
1zodA	433	29.69	c.67.1.4	125437
1vl5A	260	30.48	c.66.1.41	108720
2cvhA	220	31.96		
3b9qA	302	32.56		
1p77A	272	33.73	c.2.1.7,c.58.1.5	94214,94215
1wy7A	207	35.17	c.66.1.32	121433
2j0eA	266	37.40		
1wyuA	438	37.54	c.67.1.7	121452
3ce9A	354	38.12		
1ir6A	424	38.55	c.107.1.2	71342
3bkwA	243	39.36		
2ieeA	271	39.72		
1x19A	359	40.80		
2pocA	367	41.63		
1j8mF	297	41.67	a.24.13.1,c.37.1.10	62742,62743
1s3iA	310	42.63	b.46.1.1,c.65.1.1	98435,98436
1ls1A	295	43.44	a.24.13.1,c.37.1.10	78170,78171
2eq5A	228	43.82		
3b9pA	297	43.91		
2jfzA	255	44.80		
1nnwA	252	47.25	d.159.1.5	80674
1xxlA	239	48.50	c.66.1.41	116203
2q0yA	153	48.99		
1qwkA	317	49.84	c.1.7.1	96482
2gh1A	301	50.61	c.66.1.49	135170
1uteA	313	50.61	d.159.1.1	42078
1yzfA	195	51.14	c.23.10.5	124275
2q8uA	336	51.30		
2dri	271	51.80		
1a76A	326	52.48	a.60.7.1,c.120.1.2	18091,33361
2pxxA	215	52.55		
2okgA	255	53.51		
2douA	376	53.85		
2ehhA	294	54.25		
1im8A	244	54.26	c.66.1.14	66212
1mjhA	162	54.79	c.26.2.4	31639
1wwzA	159	55.14	d.108.1.1	121380
1luaA	287	55.64	c.2.1.7,c.58.1.4	78216,78217
2rfgA	297	55.76		
1zu4A	320	57.46		
1wdnA	226	58.60	c.94.1.1	35816
1ve3A	227	58.68	c.66.1.43	120010
2uxqA	402	60.05		
1vhwA	253	60.21	c.56.2.1	100706
2cb1A	412	60.52		
1tqjA	230	60.66	c.1.2.2	107228
1vkcA	158	60.97	d.108.1.1	113663
2qy9A	309	61.04		
1nytA	271	61.26	c.2.1.7,c.58.1.5	86417,86418
2ex4A	241	62.33	c.66.1.42	132516
1jvnA	555	62.39	c.1.2.1,c.23.16.1	67355,67356
1moqA	368	64.35	c.80.1.1	35302
1mi3A	322	66.06	c.1.7.1	91274
1rxwA	336	66.15	a.60.7.1,c.120.1.2	98059,98060
2p8jA	209	66.20		
1zgdA	312	66.38		
2rebA	352	67.71	c.37.1.11,d.48.1.1	32282,38767
1vzwA	244	67.71	c.1.2.1	120553
3bn1A	373	68.44		
2gzxA	265	68.77		
2fcaA	213	68.77	c.66.1.53	133262
2j6vA	301	68.90		
1jysA	242	69.91	c.56.2.1	77216
1muwA	386	69.99	c.1.15.3	79495
3beoA	375	71.58		
1zx0A	236	72.00	c.66.1.16	125757
2h00A	254	72.29	c.66.1.54	135925
2a8yA	270	72.61		
1ri5A	298	73.73	c.66.1.34	97502
1qyrA	252	74.37	c.66.1.24	104657
2p67A	341	74.68		
1u94A	356	76.21	c.37.1.11,d.48.1.1	107743,107744
1o5kA	306	76.89	c.1.10.1	92504
2i6gA	199	76.97	c.66.1.44	137096
1jsxA	207	77.16	c.66.1.20	71846
1hslA	238	78.41	c.94.1.1	35804
1v77A	212	79.75	c.6.3.2	108402
1dl5A	317	79.86	c.66.1.7,d.197.1.1	64720,64721
1i60A	278	80.08	c.1.15.4	71118
1m7yA	435	80.55	c.67.1.4	78761
2g0wA	296	80.62	c.1.15.4	134503
1frb	315	81.43		
3b3fA	341	81.81		
1v5xA	203	82.04	c.1.2.4	100377
2jfuA	291	83.18		
2jisA	515	83.26		
1qjcA	158	83.39	c.26.1.3	63328
1y1pA	342	85.59	c.2.1.2	122550
2nq2C	253	86.69		
1xi3A	215	87.14	c.1.3.1	109601
2yvtA	260	87.16		
2hf9A	226	87.49		
1eg5A	384	87.65	c.67.1.3	34429
1zuwA	272	87.72		
8abpA	306	88.53	c.93.1.1	35647
1jixA	351	88.70	c.87.1.1	63081