# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 9.72e-21 1sur 215 2.07e-19 1surA 215 9.71e-19 c.26.2.2 31620 2goyA 275 3.06e-18 1zunA 325 2.39e-17 c.26.2.2 125676 2pg3A 232 3.83e-16 1wy5A 317 8.32e-15 c.26.2.5,d.229.1.1 121428,121429 1xngA 268 4.38e-14 c.26.2.1 122186 1ni5A 433 1.34e-13 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2hmaA 376 3.08e-13 1k92A 455 1.43e-12 c.26.2.1,d.210.1.1 68325,68326 2dplA 308 1.73e-12 1kqpA 271 5.53e-12 c.26.2.1 72883 1vl2A 421 6.87e-12 c.26.2.1,d.210.1.1 108708,108709 1ru8A 232 1.49e-11 c.26.2.1 97849 1korA 400 3.15e-11 c.26.2.1,d.210.1.1 72824,72825 2e18A 257 6.96e-11 1gpmA 525 7.30e-11 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1wxiA 275 1.30e-10 c.26.2.1 121400 2c5sA 413 4.72e-10 c.26.2.6,d.308.1.1 129950,129951 2d13A 227 3.14e-08 c.26.2.1 131121 1q15A 503 6.79e-07 c.26.2.1,d.153.1.1 95538,95539 1m1zA 513 9.38e-07 c.26.2.1,d.153.1.1 78457,78458 1ct9A 553 3.35e-05 c.26.2.1,d.153.1.1 31616,41834 1vbkA 307 0.005652 c.26.2.6,d.308.1.1 119957,119958 2dxnA 274 0.05957 2nxfA 322 0.6962 2qe6A 274 0.9234 2ax3A 502 1.526 c.72.1.4,c.104.1.1 127477,127478 1fs5A 266 2.260 c.124.1.1 65044 1l1eA 287 2.578 c.66.1.18 73454 1kpgA 287 2.793 c.66.1.18 68735 2pfsA 150 2.987 2dumA 170 3.160 1y8cA 246 3.703 c.66.1.43 116563 2gekA 406 4.870 1a76 326 5.010 1escA 306 5.031 c.23.10.1 31334 2bkxA 242 5.242 2yqzA 263 6.290 2fk8A 318 6.323 c.66.1.18 133648 1ne7A 289 7.101 c.124.1.1 91833 1wznA 252 7.189 c.66.1.43 121525 2z08A 137 7.819 2hy1A 280 7.866 2aotA 292 8.799 c.66.1.19 127098 1y89A 238 9.293 2bw0A 329 9.347 b.46.1.1,c.65.1.1 129303,129304 2f8lA 344 9.394 c.66.1.45 133132 2a0nA 265 10.05 c.1.2.1 125961 2d5cA 263 10.99 1v4vA 376 11.11 c.87.1.3 100313 2a22A 215 12.18 d.159.1.7 126025 2blnA 305 12.25 b.46.1.1,c.65.1.1 128734,128735 1xtpA 254 12.98 c.66.1.42 116031 1xdzA 240 13.11 c.66.1.20 115196 1tq8A 163 13.31 c.26.2.4 107204 2gm3A 175 13.63 c.26.2.4 135354 1ss9A 311 14.17 c.68.1.4 105978 1vl1A 232 14.46 c.124.1.1 108707 1wjgA 137 14.52 c.26.2.4 114696 2bkwA 385 14.96 c.67.1.3 128714 1h5yA 253 15.47 c.1.2.1 65638 1yzhA 214 16.02 c.66.1.53 124277 1t3iA 420 17.94 c.67.1.3 106354 1yx1A 264 18.18 c.1.15.7 124169 1b9hA 388 18.39 c.67.1.4 34488 1jmvA 141 19.41 c.26.2.4 66897 1ga8A 311 19.77 c.68.1.4 34516 2j0eA 266 20.59 2dr3A 247 22.66 1d2nA 272 23.28 c.37.1.20 32428 1wtaA 275 24.25 1eluA 390 25.07 c.67.1.3 34434 1vp8A 201 25.15 c.49.1.2 113947 3ce9A 354 25.38 2cvhA 220 26.06 1ta8A 332 27.26 d.142.2.2 112375 1jf9A 408 29.22 c.67.1.3 62931 2ac7A 235 29.97 c.56.2.1 126543 2gmsA 390 30.17 1w24A 182 30.87 d.159.1.7 120579 2hnkA 239 31.97 2ieeA 271 31.99 1zodA 433 32.60 c.67.1.4 125437 2qytA 317 33.31 1ir6A 424 34.43 c.107.1.2 71342 1s3iA 310 37.21 b.46.1.1,c.65.1.1 98435,98436 2o57A 297 37.38 3b9qA 302 37.87 1luaA 287 37.94 c.2.1.7,c.58.1.4 78216,78217 2q02A 272 38.56 1p77A 272 39.59 c.2.1.7,c.58.1.5 94214,94215 1wyuA 438 40.88 c.67.1.7 121452 2rfgA 297 40.95 2jfzA 255 41.28 1a76A 326 41.43 a.60.7.1,c.120.1.2 18091,33361 1wwzA 159 42.44 d.108.1.1 121380 1ls1A 295 42.51 a.24.13.1,c.37.1.10 78170,78171 1vl5A 260 44.28 c.66.1.41 108720 2dri 271 45.33 2ehhA 294 45.47 1wy7A 207 45.95 c.66.1.32 121433 1x19A 359 46.64 2q0yA 153 46.67 1nnwA 252 46.81 d.159.1.5 80674 3b9pA 297 47.24 2uxqA 402 48.12 3beoA 375 48.23 2eq5A 228 48.28 3bkwA 243 48.65 2q8uA 336 48.66 1ri5A 298 49.48 c.66.1.34 97502 1qwkA 317 49.82 c.1.7.1 96482 2qy9A 309 50.52 1zx0A 236 51.09 c.66.1.16 125757 1wdnA 226 51.60 c.94.1.1 35816 2pocA 367 52.99 1ve3A 227 55.40 c.66.1.43 120010 2pxxA 215 57.97 1zu4A 320 58.14 1vzwA 244 58.41 c.1.2.1 120553 1yzfA 195 58.49 c.23.10.5 124275 2i6gA 199 60.50 c.66.1.44 137096 2yvtA 260 62.31 2fcaA 213 62.71 c.66.1.53 133262 1jixA 351 62.73 c.87.1.1 63081 1mjhA 162 62.74 c.26.2.4 31639 2cb1A 412 62.77 1mi3A 322 63.04 c.1.7.1 91274 2p67A 341 63.52 1vkcA 158 63.68 d.108.1.1 113663 1rxwA 336 64.91 a.60.7.1,c.120.1.2 98059,98060 1xxlA 239 65.06 c.66.1.41 116203 2okgA 255 66.20 1muwA 386 67.64 c.1.15.3 79495 1tqjA 230 68.24 c.1.2.2 107228 1nytA 271 68.66 c.2.1.7,c.58.1.5 86417,86418 3ch7A 266 69.66 2p8jA 209 70.38 2gh1A 301 70.45 c.66.1.49 135170 1jysA 242 70.48 c.56.2.1 77216 2jisA 515 70.68 1jvnA 555 71.18 c.1.2.1,c.23.16.1 67355,67356 2gzxA 265 71.37 1zgdA 312 71.71 1i60A 278 72.14 c.1.15.4 71118 1moqA 368 72.48 c.80.1.1 35302 1lc5A 364 74.18 c.67.1.1 73827 1o5kA 306 74.31 c.1.10.1 92504 1uteA 313 75.07 d.159.1.1 42078 1qyrA 252 75.99 c.66.1.24 104657 1j8mF 297 76.69 a.24.13.1,c.37.1.10 62742,62743 1s95A 333 77.80 d.159.1.3 105375 2g0wA 296 77.93 c.1.15.4 134503 1tjyA 316 78.49 c.93.1.1 107062 3bn1A 373 79.24 3b3fA 341 79.56 1frb 315 80.25 1vhwA 253 80.52 c.56.2.1 100706 1mdoA 393 81.14 c.67.1.4 79013 1rvgA 305 84.73 c.1.10.2 97920 2hf9A 226 85.39 2douA 376 86.49 1iowA 306 86.79 c.30.1.2,d.142.1.1 31713,41481 1z2wA 192 88.71 d.159.1.7 124390 8abpA 306 88.81 c.93.1.1 35647 2a8yA 270 89.41