# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 1.84e-18 1sur 215 3.89e-17 1surA 215 1.16e-16 c.26.2.2 31620 2goyA 275 3.91e-16 1zunA 325 1.21e-15 c.26.2.2 125676 2pg3A 232 6.24e-14 1wy5A 317 1.45e-13 c.26.2.5,d.229.1.1 121428,121429 1xngA 268 1.33e-12 c.26.2.1 122186 1ni5A 433 2.37e-12 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2hmaA 376 4.39e-12 2dplA 308 5.45e-11 1k92A 455 1.80e-10 c.26.2.1,d.210.1.1 68325,68326 1kqpA 271 2.64e-10 c.26.2.1 72883 1vl2A 421 4.08e-10 c.26.2.1,d.210.1.1 108708,108709 1ru8A 232 4.64e-10 c.26.2.1 97849 2e18A 257 8.12e-10 1gpmA 525 1.04e-09 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1wxiA 275 1.61e-09 c.26.2.1 121400 1korA 400 1.76e-09 c.26.2.1,d.210.1.1 72824,72825 2c5sA 413 2.40e-08 c.26.2.6,d.308.1.1 129950,129951 2d13A 227 2.13e-07 c.26.2.1 131121 1q15A 503 6.74e-06 c.26.2.1,d.153.1.1 95538,95539 1m1zA 513 7.76e-06 c.26.2.1,d.153.1.1 78457,78458 1ct9A 553 0.000215 c.26.2.1,d.153.1.1 31616,41834 1vbkA 307 0.04437 c.26.2.6,d.308.1.1 119957,119958 1kpgA 287 0.3005 c.66.1.18 68735 2fk8A 318 0.7808 c.66.1.18 133648 2dxnA 274 0.8246 1y8cA 246 0.9417 c.66.1.43 116563 1l1eA 287 1.587 c.66.1.18 73454 2qe6A 274 1.739 2pfsA 150 2.146 1xtpA 254 2.693 c.66.1.42 116031 2dumA 170 2.836 1fs5A 266 2.956 c.124.1.1 65044 2z08A 137 3.234 2ax3A 502 3.583 c.72.1.4,c.104.1.1 127477,127478 2d5cA 263 3.989 2nxfA 322 5.325 1luaA 287 5.610 c.2.1.7,c.58.1.4 78216,78217 1p77A 272 6.995 c.2.1.7,c.58.1.5 94214,94215 1eluA 390 7.415 c.67.1.3 34434 2dr3A 247 7.789 1wjgA 137 8.007 c.26.2.4 114696 2gm3A 175 8.390 c.26.2.4 135354 1zx0A 236 9.014 c.66.1.16 125757 2blnA 305 9.403 b.46.1.1,c.65.1.1 128734,128735 1jk7A 323 10.13 d.159.1.3 63144 1ve3A 227 10.32 c.66.1.43 120010 1jmvA 141 10.93 c.26.2.4 66897 1escA 306 13.39 c.23.10.1 31334 1h5yA 253 14.36 c.1.2.1 65638 2hy1A 280 16.41 2yqzA 263 17.91 1vl5A 260 18.90 c.66.1.41 108720 1wznA 252 19.38 c.66.1.43 121525 1im8A 244 19.75 c.66.1.14 66212 1wy7A 207 21.15 c.66.1.32 121433 1xdzA 240 21.25 c.66.1.20 115196 2bw0A 329 21.93 b.46.1.1,c.65.1.1 129303,129304 2gmsA 390 21.93 1ne7A 289 22.79 c.124.1.1 91833 1rkbA 173 23.90 c.37.1.1 111854 2gh1A 301 24.51 c.66.1.49 135170 2bkxA 242 24.53 1ri5A 298 25.26 c.66.1.34 97502 3bxoA 239 26.08 1wyuA 438 27.97 c.67.1.7 121452 2hnkA 239 28.18 2ac7A 235 28.20 c.56.2.1 126543 1f0kA 364 29.14 c.87.1.2 35465 1tq8A 163 29.27 c.26.2.4 107204 2cvhA 220 29.61 1jf9A 408 29.65 c.67.1.3 62931 2h1rA 299 30.82 2j0eA 266 30.98 2ex4A 241 31.81 c.66.1.42 132516 1t3iA 420 31.83 c.67.1.3 106354 1dl5A 317 31.98 c.66.1.7,d.197.1.1 64720,64721 2a0nA 265 32.06 c.1.2.1 125961 1v4vA 376 33.19 c.87.1.3 100313 2a22A 215 33.31 d.159.1.7 126025 2o0mA 345 33.52 2yxdA 183 34.04 1nytA 271 35.06 c.2.1.7,c.58.1.5 86417,86418 2cvjA 180 36.37 2aotA 292 37.43 c.66.1.19 127098 2o57A 297 38.40 2p8jA 209 39.16 2g0wA 296 39.72 c.1.15.4 134503 1yzfA 195 40.89 c.23.10.5 124275 2hdyA 440 41.50 3bkxA 275 41.81 1vl1A 232 42.90 c.124.1.1 108707 2g5cA 281 44.56 a.100.1.12,c.2.1.6 134646,134647 1v73A 342 46.15 1x19A 359 46.18 2pxxA 215 46.33 2f8lA 344 46.96 c.66.1.45 133132 1g8aA 227 46.99 c.66.1.3 90506 2q8uA 336 47.23 1s3iA 310 48.25 b.46.1.1,c.65.1.1 98435,98436 1tw3A 360 50.88 a.4.5.29,c.66.1.12 107373,107374 1ls1A 295 51.98 a.24.13.1,c.37.1.10 78170,78171 2qiwA 255 52.46 1qamA 244 52.78 c.66.1.24 34220 1tjyA 316 53.00 c.93.1.1 107062 1yixA 265 53.11 c.1.9.12 123371 3b9qA 302 53.18 1uteA 313 53.45 d.159.1.1 42078 1qzzA 374 53.55 a.4.5.29,c.66.1.12 96719,96720 2okgA 255 53.59 1s95A 333 53.62 d.159.1.3 105375 1f8rA 498 54.32 c.3.1.2,d.16.1.5 30410,37974 2yxeA 215 54.94 1p4cA 380 55.41 c.1.4.1 94100 1s3zA 165 56.00 d.108.1.1 105250 1vhwA 253 56.73 c.56.2.1 100706 1ga8A 311 58.04 c.68.1.4 34516 1l3iA 192 58.85 c.66.1.22 77676 2gzxA 265 59.65 2bkwA 385 60.24 c.67.1.3 128714 1g8sA 230 60.52 c.66.1.3 90507 1y9aA 360 60.53 2jfzA 255 60.71 2dri 271 61.60 1vi2A 300 61.70 c.2.1.7,c.58.1.5 100726,100727 1ivnA 190 62.38 c.23.10.5 83719 1o54A 277 63.72 c.66.1.13 92482 2pocA 367 63.81 2iidA 498 64.92 c.3.1.2,d.16.1.5 137426,137427 2qy9A 309 65.60 2cb1A 412 66.18 2hk9A 275 67.77 1zq9A 285 67.80 c.66.1.24 125505 1xzoA 174 68.23 c.47.1.10 122474 3bkwA 243 69.95 1muwA 386 71.82 c.1.15.3 79495 1zbqA 327 72.10 c.2.1.2 124862 1kngA 156 72.10 c.47.1.10 72777 2eq5A 228 72.26 1qwkA 317 72.63 c.1.7.1 96482 1y89A 238 72.79 2hrcA 359 73.63 c.92.1.1 136687 8abpA 306 74.31 c.93.1.1 35647 2q0xA 335 74.80 1y4iA 398 80.03 c.67.1.3 122619 1vlmA 219 80.14 c.66.1.41 108836 1a76 326 80.78 2a4vA 159 81.29 c.47.1.10 126163 1zgdA 312 82.16 1qz9A 416 83.37 c.67.1.3 96621 2jaeA 489 83.68 1sb8A 352 83.84 c.2.1.2 105410 2df8A 325 84.01 2p7iA 250 84.95 2ehhA 294 86.58 1xxlA 239 86.73 c.66.1.41 116203 2i6gA 199 86.96 c.66.1.44 137096 1i9gA 280 87.10 c.66.1.13 62090 1k4iA 233 88.94 d.115.1.2 72056 1xafA 246 89.01 d.194.1.2 109535 3ch7A 266 89.29 1mjhA 162 89.49 c.26.2.4 31639 2qytA 317 89.61 2i7cA 283 89.64 1moqA 368 89.99 c.80.1.1 35302