# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 2.03e-21 1sur 215 3.46e-20 1surA 215 1.52e-19 c.26.2.2 31620 2goyA 275 9.00e-19 1zunA 325 2.30e-18 c.26.2.2 125676 2pg3A 232 1.23e-16 1wy5A 317 8.20e-15 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 3.06e-14 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xngA 268 4.55e-14 c.26.2.1 122186 2hmaA 376 1.03e-13 2dplA 308 4.36e-13 1k92A 455 7.08e-13 c.26.2.1,d.210.1.1 68325,68326 1vl2A 421 2.78e-12 c.26.2.1,d.210.1.1 108708,108709 1ru8A 232 7.17e-12 c.26.2.1 97849 1kqpA 271 7.93e-12 c.26.2.1 72883 1gpmA 525 1.73e-11 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1korA 400 1.97e-11 c.26.2.1,d.210.1.1 72824,72825 2e18A 257 4.62e-11 1wxiA 275 6.59e-11 c.26.2.1 121400 2c5sA 413 1.45e-09 c.26.2.6,d.308.1.1 129950,129951 2d13A 227 3.82e-08 c.26.2.1 131121 1q15A 503 2.90e-07 c.26.2.1,d.153.1.1 95538,95539 1m1zA 513 3.74e-07 c.26.2.1,d.153.1.1 78457,78458 1ct9A 553 1.80e-05 c.26.2.1,d.153.1.1 31616,41834 1vbkA 307 0.007225 c.26.2.6,d.308.1.1 119957,119958 2dxnA 274 0.1419 2pfsA 150 0.9603 2qe6A 274 1.308 1kpgA 287 1.431 c.66.1.18 68735 2nxfA 322 1.551 2ax3A 502 1.808 c.72.1.4,c.104.1.1 127477,127478 1y8cA 246 1.882 c.66.1.43 116563 2dumA 170 3.011 1l1eA 287 3.625 c.66.1.18 73454 1fs5A 266 3.640 c.124.1.1 65044 2z08A 137 5.151 2cvhA 220 5.195 2fk8A 318 5.394 c.66.1.18 133648 1jmvA 141 6.723 c.26.2.4 66897 1ne7A 289 6.863 c.124.1.1 91833 1a76 326 6.952 2yqzA 263 6.995 1eluA 390 7.107 c.67.1.3 34434 1escA 306 7.123 c.23.10.1 31334 1wjgA 137 7.161 c.26.2.4 114696 2hy1A 280 8.095 2bw0A 329 8.120 b.46.1.1,c.65.1.1 129303,129304 2blnA 305 8.810 b.46.1.1,c.65.1.1 128734,128735 2dr3A 247 9.464 2bkxA 242 9.466 1wyuA 438 9.585 c.67.1.7 121452 2bkwA 385 10.31 c.67.1.3 128714 1vl1A 232 10.33 c.124.1.1 108707 2a0nA 265 10.37 c.1.2.1 125961 1tq8A 163 10.50 c.26.2.4 107204 1v4vA 376 10.84 c.87.1.3 100313 1wznA 252 10.89 c.66.1.43 121525 1jf9A 408 11.01 c.67.1.3 62931 2gm3A 175 11.53 c.26.2.4 135354 2a22A 215 11.60 d.159.1.7 126025 1xdzA 240 12.43 c.66.1.20 115196 2gmsA 390 12.58 1t3iA 420 12.91 c.67.1.3 106354 1xtpA 254 13.57 c.66.1.42 116031 2aotA 292 14.32 c.66.1.19 127098 1y4iA 398 15.22 c.67.1.3 122619 3bkxA 275 17.08 2f8lA 344 17.49 c.66.1.45 133132 2d5cA 263 19.82 1vp8A 201 19.97 c.49.1.2 113947 3b9qA 302 20.93 1ss9A 311 20.98 c.68.1.4 105978 1w24A 182 21.07 d.159.1.7 120579 1ga8A 311 21.16 c.68.1.4 34516 2hnkA 239 21.49 2cb1A 412 21.72 1zodA 433 21.88 c.67.1.4 125437 1h5yA 253 22.39 c.1.2.1 65638 2gekA 406 23.18 1nnwA 252 23.21 d.159.1.5 80674 1ve3A 227 23.36 c.66.1.43 120010 2pocA 367 24.84 1rxwA 336 24.90 a.60.7.1,c.120.1.2 98059,98060 1yx1A 264 26.12 c.1.15.7 124169 1s3iA 310 28.14 b.46.1.1,c.65.1.1 98435,98436 1eg5A 384 28.86 c.67.1.3 34429 1yzhA 214 29.93 c.66.1.53 124277 2j0eA 266 29.95 1jvnA 555 30.07 c.1.2.1,c.23.16.1 67355,67356 1y89A 238 30.29 1vl5A 260 30.84 c.66.1.41 108720 2ex4A 241 31.23 c.66.1.42 132516 1wtaA 275 31.33 3bn1A 373 31.65 2qy9A 309 31.84 2hdyA 440 34.77 1d2nA 272 34.91 c.37.1.20 32428 1zgdA 312 35.77 2jisA 515 35.87 2eq5A 228 35.92 2q02A 272 36.35 1j8mF 297 39.27 a.24.13.1,c.37.1.10 62742,62743 2ac7A 235 39.90 c.56.2.1 126543 2q8uA 336 42.18 1luaA 287 42.95 c.2.1.7,c.58.1.4 78216,78217 1ls1A 295 43.67 a.24.13.1,c.37.1.10 78170,78171 1yixA 265 45.17 c.1.9.12 123371 1ta8A 332 45.68 d.142.2.2 112375 1b9hA 388 46.37 c.67.1.4 34488 1wyuB 474 47.52 c.67.1.7 121453 1qwkA 317 47.73 c.1.7.1 96482 2qytA 317 48.24 1v73A 342 48.37 2jfzA 255 49.92 2ehhA 294 50.12 1wy7A 207 50.39 c.66.1.32 121433 1vhwA 253 51.09 c.56.2.1 100706 1tqjA 230 51.29 c.1.2.2 107228 1f74A 293 51.47 c.1.10.1 29079 2yvtA 260 51.72 1v77A 212 52.78 c.6.3.2 108402 2rfgA 297 52.91 2ieeA 271 52.91 1jk7A 323 55.56 d.159.1.3 63144 1n0wA 243 55.86 c.37.1.11 79772 1v5xA 203 56.59 c.1.2.4 100377 1xxlA 239 57.19 c.66.1.41 116203 1a76A 326 57.21 a.60.7.1,c.120.1.2 18091,33361 1s95A 333 57.36 d.159.1.3 105375 1t8sA 484 58.79 c.56.2.1 106679 1nsjA 205 59.35 c.1.2.4 28560 2o57A 297 59.65 2gzxA 265 59.74 2okgA 255 61.49 1frb 315 61.77 1gz0A 253 62.39 c.116.1.1,d.79.3.3 76391,76392 1wwzA 159 62.58 d.108.1.1 121380 1zu4A 320 63.82 2fcaA 213 64.55 c.66.1.53 133262 1jflA 228 65.69 c.78.2.1,c.78.2.1 71656,71657 2gh1A 301 67.74 c.66.1.49 135170 1jysA 242 68.09 c.56.2.1 77216 2a8yA 270 68.38 1v72A 356 70.01 c.67.1.1 119860 1vlmA 219 70.36 c.66.1.41 108836 2pxxA 215 73.84 1oc7A 364 76.97 c.6.1.1 86794 1pyoA 167 77.12 c.17.1.1 95370 1o5kA 306 80.48 c.1.10.1 92504 1y0eA 223 80.72 c.1.2.5 116297 1us0A 316 80.76 c.1.7.1 99850 2g5cA 281 81.29 a.100.1.12,c.2.1.6 134646,134647 1vzwA 244 81.41 c.1.2.1 120553 1lc5A 364 82.29 c.67.1.1 73827 3ce9A 354 83.42 3bkwA 243 83.95 2cvjA 180 84.70 2o2xA 218 84.82 1u94A 356 85.75 c.37.1.11,d.48.1.1 107743,107744 3caiA 406 85.98 2cl5A 221 86.21 c.66.1.1 130570 2a5lA 200 86.38 c.23.5.8 126176 1tw3A 360 86.62 a.4.5.29,c.66.1.12 107373,107374 2fnaA 357 86.78 a.4.5.11,c.37.1.20 133809,133810 1mi3A 322 86.92 c.1.7.1 91274 1mdoA 393 87.66 c.67.1.4 79013 2nq2C 253 88.77 1tjyA 316 89.26 c.93.1.1 107062