# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 9.71e-19 1sur 215 1.33e-17 1surA 215 5.04e-17 c.26.2.2 31620 2goyA 275 1.66e-16 1zunA 325 1.70e-16 c.26.2.2 125676 2pg3A 232 1.74e-14 1wy5A 317 5.73e-13 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 3.12e-12 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2hmaA 376 7.26e-12 1xngA 268 1.16e-11 c.26.2.1 122186 1k92A 455 1.34e-11 c.26.2.1,d.210.1.1 68325,68326 1vl2A 421 1.90e-11 c.26.2.1,d.210.1.1 108708,108709 2dplA 308 5.83e-11 1ru8A 232 6.78e-11 c.26.2.1 97849 1korA 400 1.93e-10 c.26.2.1,d.210.1.1 72824,72825 1kqpA 271 2.74e-10 c.26.2.1 72883 2e18A 257 1.18e-09 1gpmA 525 1.46e-09 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1wxiA 275 2.65e-09 c.26.2.1 121400 2c5sA 413 3.11e-08 c.26.2.6,d.308.1.1 129950,129951 2d13A 227 4.62e-07 c.26.2.1 131121 1m1zA 513 7.77e-06 c.26.2.1,d.153.1.1 78457,78458 1q15A 503 4.56e-05 c.26.2.1,d.153.1.1 95538,95539 1ct9A 553 0.000748 c.26.2.1,d.153.1.1 31616,41834 1vbkA 307 0.01427 c.26.2.6,d.308.1.1 119957,119958 2ax3A 502 0.8850 c.72.1.4,c.104.1.1 127477,127478 2dxnA 274 1.069 2pfsA 150 1.426 1y8cA 246 2.221 c.66.1.43 116563 2qe6A 274 2.321 1nnwA 252 2.372 d.159.1.5 80674 2nxfA 322 3.015 1kpgA 287 3.864 c.66.1.18 68735 2dumA 170 4.288 2cvhA 220 5.393 2bw0A 329 5.577 b.46.1.1,c.65.1.1 129303,129304 1jmvA 141 5.757 c.26.2.4 66897 1a76 326 5.775 2f8lA 344 6.480 c.66.1.45 133132 2hy1A 280 7.513 1ss9A 311 9.053 c.68.1.4 105978 1ta8A 332 9.481 d.142.2.2 112375 2z08A 137 10.62 2yqzA 263 10.63 1escA 306 10.78 c.23.10.1 31334 2blnA 305 11.42 b.46.1.1,c.65.1.1 128734,128735 1ve3A 227 12.01 c.66.1.43 120010 1ne7A 289 12.69 c.124.1.1 91833 2bkxA 242 12.70 2fk8A 318 13.08 c.66.1.18 133648 1fs5A 266 13.48 c.124.1.1 65044 1t3iA 420 13.72 c.67.1.3 106354 3b9qA 302 14.18 1vl1A 232 14.36 c.124.1.1 108707 1wznA 252 14.80 c.66.1.43 121525 1wjgA 137 15.01 c.26.2.4 114696 1l1eA 287 15.25 c.66.1.18 73454 1ga8A 311 15.95 c.68.1.4 34516 2a22A 215 16.67 d.159.1.7 126025 2gmsA 390 16.76 1eluA 390 18.14 c.67.1.3 34434 1t5oA 351 18.27 c.124.1.5 106459 2bkwA 385 18.82 c.67.1.3 128714 2a0nA 265 18.94 c.1.2.1 125961 1a76A 326 19.47 a.60.7.1,c.120.1.2 18091,33361 2gm3A 175 19.97 c.26.2.4 135354 1vp8A 201 20.95 c.49.1.2 113947 2d5cA 263 21.87 1tq8A 163 23.49 c.26.2.4 107204 1s3iA 310 23.80 b.46.1.1,c.65.1.1 98435,98436 1zodA 433 24.73 c.67.1.4 125437 1xtpA 254 24.92 c.66.1.42 116031 3bkxA 275 27.86 1wyuA 438 27.95 c.67.1.7 121452 2aotA 292 30.99 c.66.1.19 127098 1h5yA 253 32.40 c.1.2.1 65638 2jisA 515 32.49 1s95A 333 32.86 d.159.1.3 105375 1jf9A 408 33.14 c.67.1.3 62931 1yx1A 264 34.97 c.1.15.7 124169 1zgdA 312 36.13 1w24A 182 37.54 d.159.1.7 120579 2hnkA 239 39.40 1t8sA 484 40.11 c.56.2.1 106679 2q8uA 336 40.48 1ii7A 333 40.83 d.159.1.4 62415 1f8rA 498 41.67 c.3.1.2,d.16.1.5 30410,37974 1ls1A 295 41.89 a.24.13.1,c.37.1.10 78170,78171 2og2A 359 42.28 1zu4A 320 43.53 2dr3A 247 43.79 1y89A 238 45.87 1wtaA 275 46.39 1vlmA 219 47.23 c.66.1.41 108836 1frb 315 47.32 1rxwA 336 48.26 a.60.7.1,c.120.1.2 98059,98060 3bcxA 437 48.56 1jk7A 323 48.56 d.159.1.3 63144 1yzhA 214 49.28 c.66.1.53 124277 1dysA 348 49.71 c.6.1.1 30669 2fshA 853 50.64 2rfgA 297 51.12 2o0mA 345 51.51 2gdjA 264 51.82 c.37.1.11 135018 1vl5A 260 52.43 c.66.1.41 108720 1c7gA 456 52.78 c.67.1.2 90415 1l9cA 389 54.02 c.3.1.2,d.16.1.3 77815,77816 1jysA 242 54.14 c.56.2.1 77216 1rv9A 259 54.21 d.194.1.2 105105 2ex4A 241 54.64 c.66.1.42 132516 2nq5A 755 56.50 3bn1A 373 56.96 2a40B 260 57.75 d.151.1.1 126139 1luaA 287 58.28 c.2.1.7,c.58.1.4 78216,78217 1d2nA 272 58.29 c.37.1.20 32428 1yixA 265 59.15 c.1.9.12 123371 1qwkA 317 59.48 c.1.7.1 96482 2h8gA 267 60.93 2fcaA 213 61.92 c.66.1.53 133262 2ehhA 294 63.62 2dnjA 260 63.73 d.151.1.1 41790 2fnaA 357 64.42 a.4.5.11,c.37.1.20 133809,133810 1e0tA 470 64.56 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1gesA 450 65.74 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1jvnA 555 66.26 c.1.2.1,c.23.16.1 67355,67356 2ac7A 235 66.98 c.56.2.1 126543 2q4eA 362 67.66 2z5lA 511 68.18 1f74A 293 69.18 c.1.10.1 29079 1zosA 230 70.34 2e7zA 727 70.64 1nhpA 447 73.58 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1m7yA 435 74.11 c.67.1.4 78761 1lqaA 346 74.63 c.1.7.1 84674 2qt3A 403 75.00 2g50A 530 75.10 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 2gekA 406 76.24 1t8hA 277 76.89 d.194.1.2 106664 2yvtA 260 77.14 1yzfA 195 77.76 c.23.10.5 124275 1v72A 356 78.31 c.67.1.1 119860 1vhwA 253 79.62 c.56.2.1 100706 1wy7A 207 79.73 c.66.1.32 121433 1usgA 346 79.91 c.93.1.1 99864 1obbA 480 81.29 c.2.1.5,d.162.1.2 86760,86761 2v7bA 529 81.88 2cb1A 412 82.59 3b9pA 297 83.69 1iowA 306 84.98 c.30.1.2,d.142.1.1 31713,41481 1n0wA 243 85.18 c.37.1.11 79772 1xxlA 239 85.75 c.66.1.41 116203 1tqjA 230 87.23 c.1.2.2 107228 2atsA 292 87.25 c.1.10.1 127306 3caiA 406 87.44 2gqwA 408 87.79 1lam 484 87.87 1s8eA 333 88.52 d.159.1.4 105368 2qytA 317 89.12 3bijA 285 89.13 2pxxA 215 89.29 1v77A 212 89.59 c.6.3.2 108402 1cjcA 460 89.68 c.3.1.1,c.4.1.1 30319,30604