# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 3.19e-21 1sur 215 5.93e-20 1surA 215 2.48e-19 c.26.2.2 31620 2goyA 275 1.24e-18 1zunA 325 2.63e-18 c.26.2.2 125676 2pg3A 232 1.28e-16 1wy5A 317 1.94e-14 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 5.38e-14 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xngA 268 6.54e-14 c.26.2.1 122186 2hmaA 376 1.48e-13 1k92A 455 4.28e-13 c.26.2.1,d.210.1.1 68325,68326 2dplA 308 5.35e-13 1vl2A 421 2.66e-12 c.26.2.1,d.210.1.1 108708,108709 1ru8A 232 5.83e-12 c.26.2.1 97849 1kqpA 271 1.27e-11 c.26.2.1 72883 1korA 400 1.89e-11 c.26.2.1,d.210.1.1 72824,72825 1gpmA 525 2.72e-11 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2e18A 257 6.69e-11 1wxiA 275 9.78e-11 c.26.2.1 121400 2c5sA 413 1.33e-09 c.26.2.6,d.308.1.1 129950,129951 2d13A 227 3.14e-08 c.26.2.1 131121 1q15A 503 5.42e-07 c.26.2.1,d.153.1.1 95538,95539 1m1zA 513 5.44e-07 c.26.2.1,d.153.1.1 78457,78458 1ct9A 553 2.27e-05 c.26.2.1,d.153.1.1 31616,41834 1vbkA 307 0.004322 c.26.2.6,d.308.1.1 119957,119958 2dxnA 274 0.08689 2pfsA 150 0.9778 2qe6A 274 1.318 2dumA 170 1.633 2nxfA 322 1.728 2ax3A 502 1.988 c.72.1.4,c.104.1.1 127477,127478 1y8cA 246 2.481 c.66.1.43 116563 1kpgA 287 2.979 c.66.1.18 68735 1fs5A 266 4.352 c.124.1.1 65044 2z08A 137 4.505 2cvhA 220 4.617 2hy1A 280 5.322 2blnA 305 6.198 b.46.1.1,c.65.1.1 128734,128735 1l1eA 287 6.199 c.66.1.18 73454 1jmvA 141 6.550 c.26.2.4 66897 2yqzA 263 6.565 1wjgA 137 7.029 c.26.2.4 114696 2dr3A 247 7.279 2bw0A 329 7.281 b.46.1.1,c.65.1.1 129303,129304 1escA 306 7.346 c.23.10.1 31334 1ne7A 289 7.489 c.124.1.1 91833 1wznA 252 7.871 c.66.1.43 121525 2bkxA 242 8.186 2a22A 215 8.394 d.159.1.7 126025 2fk8A 318 9.687 c.66.1.18 133648 1eluA 390 9.823 c.67.1.3 34434 1tq8A 163 10.29 c.26.2.4 107204 2gm3A 175 10.38 c.26.2.4 135354 2a0nA 265 10.51 c.1.2.1 125961 1vl1A 232 11.05 c.124.1.1 108707 1wyuA 438 11.72 c.67.1.7 121452 2bkwA 385 11.77 c.67.1.3 128714 2gmsA 390 12.16 1ga8A 311 12.29 c.68.1.4 34516 1xdzA 240 12.63 c.66.1.20 115196 2f8lA 344 13.12 c.66.1.45 133132 1vp8A 201 13.12 c.49.1.2 113947 1ss9A 311 13.48 c.68.1.4 105978 1a76 326 14.38 1y4iA 398 14.43 c.67.1.3 122619 1v4vA 376 15.04 c.87.1.3 100313 2aotA 292 15.61 c.66.1.19 127098 1jf9A 408 16.88 c.67.1.3 62931 1t3iA 420 17.19 c.67.1.3 106354 3b9qA 302 18.25 2d5cA 263 18.58 1ve3A 227 19.15 c.66.1.43 120010 1w24A 182 19.51 d.159.1.7 120579 3bkxA 275 20.55 1h5yA 253 20.88 c.1.2.1 65638 2cb1A 412 21.24 1xtpA 254 22.10 c.66.1.42 116031 1nnwA 252 22.99 d.159.1.5 80674 1s3iA 310 23.71 b.46.1.1,c.65.1.1 98435,98436 2ac7A 235 24.28 c.56.2.1 126543 1yx1A 264 26.40 c.1.15.7 124169 2j0eA 266 26.60 2qy9A 309 27.12 2hnkA 239 27.41 2pocA 367 28.17 1ls1A 295 28.45 a.24.13.1,c.37.1.10 78170,78171 1jvnA 555 31.30 c.1.2.1,c.23.16.1 67355,67356 2eq5A 228 31.42 2gekA 406 32.46 1y89A 238 32.55 1j8mF 297 32.99 a.24.13.1,c.37.1.10 62742,62743 2ex4A 241 33.04 c.66.1.42 132516 1zodA 433 34.34 c.67.1.4 125437 1eg5A 384 34.90 c.67.1.3 34429 1wtaA 275 35.64 1zgdA 312 36.33 1b9hA 388 36.69 c.67.1.4 34488 2rfgA 297 37.67 1vhwA 253 38.87 c.56.2.1 100706 1rxwA 336 38.92 a.60.7.1,c.120.1.2 98059,98060 1ta8A 332 40.06 d.142.2.2 112375 1qwkA 317 40.28 c.1.7.1 96482 2ieeA 271 40.47 1luaA 287 40.57 c.2.1.7,c.58.1.4 78216,78217 2hdyA 440 40.85 1yzhA 214 41.02 c.66.1.53 124277 1vl5A 260 41.37 c.66.1.41 108720 1f74A 293 41.44 c.1.10.1 29079 2yvtA 260 42.07 1d2nA 272 43.25 c.37.1.20 32428 2jisA 515 44.37 1t8sA 484 44.93 c.56.2.1 106679 1jk7A 323 45.76 d.159.1.3 63144 2ehhA 294 45.93 1v73A 342 46.86 3bn1A 373 47.79 1s95A 333 48.35 d.159.1.3 105375 1wy7A 207 49.30 c.66.1.32 121433 2q02A 272 49.31 1zu4A 320 49.97 2jfzA 255 50.70 2q8uA 336 51.54 1n0wA 243 52.80 c.37.1.11 79772 1jysA 242 53.77 c.56.2.1 77216 1jflA 228 53.95 c.78.2.1,c.78.2.1 71656,71657 1oc7A 364 54.04 c.6.1.1 86794 2pxxA 215 55.08 1frb 315 58.69 1tqjA 230 59.17 c.1.2.2 107228 2okgA 255 60.86 1v77A 212 60.99 c.6.3.2 108402 1gz0A 253 61.38 c.116.1.1,d.79.3.3 76391,76392 3bkwA 243 62.79 1o5kA 306 62.87 c.1.10.1 92504 1yixA 265 63.94 c.1.9.12 123371 1nsjA 205 64.44 c.1.2.4 28560 1zosA 230 66.79 1v5xA 203 67.02 c.1.2.4 100377 1wyuB 474 67.38 c.67.1.7 121453 1xxlA 239 68.34 c.66.1.41 116203 1us0A 316 68.94 c.1.7.1 99850 1wwzA 159 68.95 d.108.1.1 121380 1p77A 272 69.39 c.2.1.7,c.58.1.5 94214,94215 1mi3A 322 69.57 c.1.7.1 91274 1fmtA 314 69.60 b.46.1.1,c.65.1.1 25758,34174 2fcaA 213 70.39 c.66.1.53 133262 1jixA 351 72.73 c.87.1.1 63081 2a5lA 200 73.69 c.23.5.8 126176 1y0eA 223 73.85 c.1.2.5 116297 1jxhA 288 74.37 c.72.1.2 67415 1uteA 313 76.23 d.159.1.1 42078 2o0mA 345 76.28 2qytA 317 77.53 3ce9A 354 77.64 1vzwA 244 78.47 c.1.2.1 120553 1odfA 290 79.10 c.37.1.6 92782 1yzfA 195 79.13 c.23.10.5 124275 2o2xA 218 79.80 1f8rA 498 80.58 c.3.1.2,d.16.1.5 30410,37974 1vlmA 219 81.40 c.66.1.41 108836 1pyoA 167 81.71 c.17.1.1 95370 2a8yA 270 81.75 2cl5A 221 82.00 c.66.1.1 130570 1lssA 140 82.40 c.2.1.9 74246 2cvjA 180 83.27 1ir6A 424 86.11 c.107.1.2 71342 2q0yA 153 86.66 2gdjA 264 86.98 c.37.1.11 135018 1xm7A 195 87.46 d.159.1.8 115473 2ao0A 324 89.26 1zuaX 317 89.31 1u94A 356 89.78 c.37.1.11,d.48.1.1 107743,107744