# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 2.52e-20 1sur 215 4.90e-19 1surA 215 2.39e-18 c.26.2.2 31620 2goyA 275 8.17e-18 1zunA 325 1.59e-17 c.26.2.2 125676 2pg3A 232 7.06e-16 1wy5A 317 2.68e-14 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 1.05e-13 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xngA 268 1.62e-13 c.26.2.1 122186 2hmaA 376 2.84e-13 2dplA 308 1.24e-12 1k92A 455 1.70e-12 c.26.2.1,d.210.1.1 68325,68326 1vl2A 421 6.48e-12 c.26.2.1,d.210.1.1 108708,108709 1ru8A 232 9.68e-12 c.26.2.1 97849 1kqpA 271 1.61e-11 c.26.2.1 72883 1korA 400 4.33e-11 c.26.2.1,d.210.1.1 72824,72825 1gpmA 525 5.32e-11 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1wxiA 275 2.02e-10 c.26.2.1 121400 2e18A 257 2.92e-10 2c5sA 413 2.22e-09 c.26.2.6,d.308.1.1 129950,129951 2d13A 227 2.94e-08 c.26.2.1 131121 1m1zA 513 8.05e-07 c.26.2.1,d.153.1.1 78457,78458 1q15A 503 1.27e-06 c.26.2.1,d.153.1.1 95538,95539 1ct9A 553 2.57e-05 c.26.2.1,d.153.1.1 31616,41834 1vbkA 307 0.009543 c.26.2.6,d.308.1.1 119957,119958 2dxnA 274 0.2919 2qe6A 274 0.5479 1kpgA 287 1.971 c.66.1.18 68735 2dumA 170 2.110 1y8cA 246 2.210 c.66.1.43 116563 2ax3A 502 2.334 c.72.1.4,c.104.1.1 127477,127478 1fs5A 266 2.450 c.124.1.1 65044 2nxfA 322 2.695 1a76 326 2.840 2pfsA 150 2.879 2yqzA 263 4.438 1escA 306 4.631 c.23.10.1 31334 1l1eA 287 4.689 c.66.1.18 73454 1wznA 252 4.753 c.66.1.43 121525 1jf9A 408 5.027 c.67.1.3 62931 1t3iA 420 5.110 c.67.1.3 106354 2bkxA 242 6.219 2hy1A 280 6.497 2blnA 305 7.728 b.46.1.1,c.65.1.1 128734,128735 2fk8A 318 7.778 c.66.1.18 133648 1ne7A 289 7.872 c.124.1.1 91833 2z08A 137 8.887 1xtpA 254 9.684 c.66.1.42 116031 1ss9A 311 10.17 c.68.1.4 105978 1eluA 390 11.18 c.67.1.3 34434 2bw0A 329 11.28 b.46.1.1,c.65.1.1 129303,129304 2bkwA 385 11.93 c.67.1.3 128714 1ga8A 311 12.40 c.68.1.4 34516 1xdzA 240 12.68 c.66.1.20 115196 1tq8A 163 13.22 c.26.2.4 107204 2gm3A 175 13.59 c.26.2.4 135354 1zodA 433 13.84 c.67.1.4 125437 1a76A 326 15.66 a.60.7.1,c.120.1.2 18091,33361 1wjgA 137 15.69 c.26.2.4 114696 1jmvA 141 16.20 c.26.2.4 66897 2a22A 215 18.29 d.159.1.7 126025 2f8lA 344 19.46 c.66.1.45 133132 1wyuA 438 21.20 c.67.1.7 121452 1yzhA 214 22.02 c.66.1.53 124277 2dr3A 247 22.10 1vp8A 201 23.19 c.49.1.2 113947 2d5cA 263 23.62 1s95A 333 25.54 d.159.1.3 105375 1jk7A 323 25.77 d.159.1.3 63144 2cvhA 220 26.36 1y89A 238 26.78 1vl1A 232 27.23 c.124.1.1 108707 1d2nA 272 28.42 c.37.1.20 32428 2i6gA 199 28.58 c.66.1.44 137096 1w24A 182 29.84 d.159.1.7 120579 1wtaA 275 29.88 1zx0A 236 31.33 c.66.1.16 125757 1y4iA 398 32.02 c.67.1.3 122619 1ve3A 227 35.27 c.66.1.43 120010 1zu4A 320 35.70 1yx1A 264 35.83 c.1.15.7 124169 2a0nA 265 36.09 c.1.2.1 125961 2gekA 406 36.45 2ac7A 235 37.01 c.56.2.1 126543 1ta8A 332 38.48 d.142.2.2 112375 1rxwA 336 38.68 a.60.7.1,c.120.1.2 98059,98060 2hnkA 239 38.88 2aotA 292 39.96 c.66.1.19 127098 2gmsA 390 41.59 2ieeA 271 41.69 2gnpA 266 41.97 2ex4A 241 42.03 c.66.1.42 132516 1eg5A 384 43.08 c.67.1.3 34429 1luaA 287 43.96 c.2.1.7,c.58.1.4 78216,78217 2okgA 255 45.06 2rfgA 297 45.22 2jisA 515 45.39 2yvtA 260 45.62 2hdyA 440 46.31 2ri0A 234 46.33 2p8jA 209 46.45 1ri5A 298 46.62 c.66.1.34 97502 1vl5A 260 46.82 c.66.1.41 108720 1p77A 272 47.40 c.2.1.7,c.58.1.5 94214,94215 1vhwA 253 47.43 c.56.2.1 100706 1b9hA 388 48.19 c.67.1.4 34488 1nnwA 252 49.32 d.159.1.5 80674 1uteA 313 49.79 d.159.1.1 42078 2pocA 367 50.15 1jvnA 555 50.90 c.1.2.1,c.23.16.1 67355,67356 1p3wA 404 50.94 c.67.1.3 87752 1s3iA 310 50.97 b.46.1.1,c.65.1.1 98435,98436 2q0yA 153 52.16 1w23A 360 52.44 c.67.1.4 114088 1y1pA 342 52.65 c.2.1.2 122550 2o3hA 285 52.67 2uxqA 402 52.89 3bxoA 239 53.32 2eq5A 228 53.66 2o0mA 345 56.99 3b3fA 341 57.39 2fcaA 213 58.23 c.66.1.53 133262 1v4vA 376 58.99 c.87.1.3 100313 1wwzA 159 59.68 d.108.1.1 121380 2a8yA 270 60.66 1tjyA 316 60.69 c.93.1.1 107062 1ir6A 424 62.56 c.107.1.2 71342 3ce9A 354 64.48 1qwkA 317 64.75 c.1.7.1 96482 1v72A 356 64.99 c.67.1.1 119860 1xxlA 239 65.75 c.66.1.41 116203 3bkxA 275 65.99 2jfzA 255 66.21 2q02A 272 67.91 2qytA 317 68.73 1rvgA 305 69.58 c.1.10.2 97920 3ch7A 266 70.56 2ehhA 294 70.90 1j8mF 297 73.92 a.24.13.1,c.37.1.10 62742,62743 2gh1A 301 75.22 c.66.1.49 135170 1mjhA 162 75.39 c.26.2.4 31639 1v73A 342 76.34 1ecfA 504 76.79 c.61.1.1,d.153.1.1 34053,41820 1v5xA 203 76.85 c.1.2.4 100377 2qy9A 309 77.19 1f74A 293 77.59 c.1.10.1 29079 2qt3A 403 78.96 2iojA 139 79.06 1tqjA 230 79.09 c.1.2.2 107228 1e0tA 470 79.81 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1yzfA 195 80.53 c.23.10.5 124275 2dri 271 82.69 1nytA 271 82.84 c.2.1.7,c.58.1.5 86417,86418 1kmkA 406 83.24 c.67.1.3 68696 2cb1A 412 84.09 1wy7A 207 84.10 c.66.1.32 121433 1vkcA 158 84.44 d.108.1.1 113663 2amxA 376 85.79 c.1.9.1 127024 2j0eA 266 86.10 2zbwA 335 87.19 1oc7A 364 87.69 c.6.1.1 86794 1nsjA 205 88.04 c.1.2.4 28560 1moqA 368 89.11 c.80.1.1 35302 1zgdA 312 89.59 1usgA 346 89.86 c.93.1.1 99864 1jqlB 140 89.91 c.37.1.20 63234