# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 5.35e-22 1sur 215 8.54e-21 1surA 215 5.03e-20 c.26.2.2 31620 2goyA 275 2.80e-19 1zunA 325 1.04e-18 c.26.2.2 125676 2pg3A 232 4.53e-17 1wy5A 317 2.10e-15 c.26.2.5,d.229.1.1 121428,121429 1xngA 268 1.72e-14 c.26.2.1 122186 1ni5A 433 1.78e-14 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2hmaA 376 4.02e-14 2dplA 308 1.50e-13 1k92A 455 1.96e-13 c.26.2.1,d.210.1.1 68325,68326 1vl2A 421 7.41e-13 c.26.2.1,d.210.1.1 108708,108709 1ru8A 232 2.48e-12 c.26.2.1 97849 1kqpA 271 2.59e-12 c.26.2.1 72883 1korA 400 4.69e-12 c.26.2.1,d.210.1.1 72824,72825 1gpmA 525 6.96e-12 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1wxiA 275 3.47e-11 c.26.2.1 121400 2e18A 257 4.34e-11 2c5sA 413 1.82e-10 c.26.2.6,d.308.1.1 129950,129951 2d13A 227 1.76e-08 c.26.2.1 131121 1m1zA 513 4.45e-07 c.26.2.1,d.153.1.1 78457,78458 1q15A 503 5.87e-07 c.26.2.1,d.153.1.1 95538,95539 1ct9A 553 6.27e-06 c.26.2.1,d.153.1.1 31616,41834 1vbkA 307 0.003259 c.26.2.6,d.308.1.1 119957,119958 2dxnA 274 0.04985 2qe6A 274 0.7539 1kpgA 287 1.043 c.66.1.18 68735 1y8cA 246 1.864 c.66.1.43 116563 2nxfA 322 1.917 2ax3A 502 1.972 c.72.1.4,c.104.1.1 127477,127478 2pfsA 150 2.023 1l1eA 287 2.223 c.66.1.18 73454 1a76 326 2.803 1fs5A 266 3.061 c.124.1.1 65044 2dumA 170 3.235 2yqzA 263 4.530 2fk8A 318 4.599 c.66.1.18 133648 1escA 306 4.694 c.23.10.1 31334 1wznA 252 5.278 c.66.1.43 121525 1jf9A 408 5.382 c.67.1.3 62931 2blnA 305 5.698 b.46.1.1,c.65.1.1 128734,128735 2z08A 137 7.287 2bkxA 242 8.370 2hy1A 280 8.481 1wjgA 137 10.39 c.26.2.4 114696 1t3iA 420 10.40 c.67.1.3 106354 2bw0A 329 11.12 b.46.1.1,c.65.1.1 129303,129304 1tq8A 163 11.24 c.26.2.4 107204 2gm3A 175 11.50 c.26.2.4 135354 1ne7A 289 11.74 c.124.1.1 91833 1vp8A 201 12.66 c.49.1.2 113947 1ss9A 311 12.67 c.68.1.4 105978 2cvhA 220 13.49 1xdzA 240 13.79 c.66.1.20 115196 1v4vA 376 13.91 c.87.1.3 100313 1ga8A 311 14.37 c.68.1.4 34516 1zodA 433 14.74 c.67.1.4 125437 2bkwA 385 14.75 c.67.1.3 128714 2dr3A 247 15.00 1xtpA 254 15.99 c.66.1.42 116031 1jmvA 141 16.32 c.26.2.4 66897 2a0nA 265 16.51 c.1.2.1 125961 2a22A 215 17.45 d.159.1.7 126025 2d5cA 263 18.74 1eluA 390 18.85 c.67.1.3 34434 2aotA 292 19.09 c.66.1.19 127098 2gekA 406 19.11 1yx1A 264 20.04 c.1.15.7 124169 1wyuA 438 20.76 c.67.1.7 121452 2hnkA 239 21.35 1ve3A 227 22.86 c.66.1.43 120010 2gh1A 301 23.25 c.66.1.49 135170 1wtaA 275 23.76 1a76A 326 24.27 a.60.7.1,c.120.1.2 18091,33361 2ieeA 271 27.34 2cb1A 412 27.44 1d2nA 272 27.61 c.37.1.20 32428 2f8lA 344 27.66 c.66.1.45 133132 1y89A 238 27.72 1yzhA 214 28.78 c.66.1.53 124277 2a8yA 270 29.09 1ta8A 332 29.10 d.142.2.2 112375 1p77A 272 30.46 c.2.1.7,c.58.1.5 94214,94215 2qytA 317 30.46 1h5yA 253 31.01 c.1.2.1 65638 1uteA 313 31.17 d.159.1.1 42078 2pocA 367 31.21 1vl5A 260 31.23 c.66.1.41 108720 1jvnA 555 31.37 c.1.2.1,c.23.16.1 67355,67356 1y4iA 398 31.38 c.67.1.3 122619 3ce9A 354 32.14 1vl1A 232 32.36 c.124.1.1 108707 2p8jA 209 32.81 1wyuB 474 33.62 c.67.1.7 121453 2ac7A 235 35.21 c.56.2.1 126543 2i6gA 199 36.88 c.66.1.44 137096 2ex4A 241 37.41 c.66.1.42 132516 2qy9A 309 37.94 1tqjA 230 38.03 c.1.2.2 107228 1xxlA 239 38.40 c.66.1.41 116203 2yvtA 260 39.72 1w24A 182 40.02 d.159.1.7 120579 1jysA 242 40.53 c.56.2.1 77216 2eq5A 228 40.65 2gmsA 390 40.65 2rfgA 297 41.31 2q0yA 153 42.03 2q02A 272 43.56 1s3iA 310 43.81 b.46.1.1,c.65.1.1 98435,98436 1vkcA 158 45.27 d.108.1.1 113663 1yzfA 195 45.28 c.23.10.5 124275 3bxoA 239 45.96 2fcaA 213 46.27 c.66.1.53 133262 1rxwA 336 47.04 a.60.7.1,c.120.1.2 98059,98060 1moqA 368 48.40 c.80.1.1 35302 1eg5A 384 48.85 c.67.1.3 34429 2dri 271 49.67 1zu4A 320 49.70 2ehhA 294 50.07 3bkxA 275 51.79 1m7yA 435 53.43 c.67.1.4 78761 1zx0A 236 53.46 c.66.1.16 125757 1ivnA 190 54.16 c.23.10.5 83719 1s95A 333 55.15 d.159.1.3 105375 2jisA 515 55.89 1vhwA 253 57.01 c.56.2.1 100706 1v1aA 309 58.03 c.72.1.1 100249 1f74A 293 58.81 c.1.10.1 29079 1m1nA 491 59.44 c.92.2.3 78417 1tjyA 316 59.82 c.93.1.1 107062 1fmtA 314 60.89 b.46.1.1,c.65.1.1 25758,34174 1b9hA 388 61.05 c.67.1.4 34488 1wdnA 226 61.35 c.94.1.1 35816 1v73A 342 62.08 1zgdA 312 62.67 2uxqA 402 62.88 2jfzA 255 63.43 2ri0A 234 63.53 1lstA 239 64.44 c.94.1.1 35755 2j0eA 266 65.03 1mjhA 162 65.57 c.26.2.4 31639 1hslA 238 65.83 c.94.1.1 35804 1jk7A 323 66.90 d.159.1.3 63144 2hdyA 440 66.97 1nnwA 252 67.68 d.159.1.5 80674 2gnpA 266 69.02 2a5lA 200 69.31 c.23.5.8 126176 1ri5A 298 69.36 c.66.1.34 97502 1v5xA 203 71.93 c.1.2.4 100377 2amxA 376 72.09 c.1.9.1 127024 1qwkA 317 73.17 c.1.7.1 96482 1zosA 230 74.31 1wwzA 159 74.86 d.108.1.1 121380 2cjgA 449 75.72 3b9qA 302 77.03 2okgA 255 77.84 1e0tA 470 78.99 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 3bkwA 243 79.13 1n0wA 243 80.33 c.37.1.11 79772 2iojA 139 80.55 1z2wA 192 80.78 d.159.1.7 124390 1gz0A 253 80.89 c.116.1.1,d.79.3.3 76391,76392 1mi3A 322 81.76 c.1.7.1 91274 1v77A 212 82.27 c.6.3.2 108402 1luaA 287 82.39 c.2.1.7,c.58.1.4 78216,78217 2i5iA 263 83.48 1wy7A 207 84.13 c.66.1.32 121433 2fp4B 395 86.59 c.23.4.1,d.142.1.4 133897,133898 1qyrA 252 87.11 c.66.1.24 104657 2gzxA 265 87.17 2o3hA 285 87.32 2h1rA 299 88.03 1l5oA 356 88.75 c.39.1.1 77711 3c3jA 384 88.84