# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 1.36e-20 1sur 215 1.65e-19 1surA 215 8.86e-19 c.26.2.2 31620 2goyA 275 2.69e-18 1zunA 325 1.23e-17 c.26.2.2 125676 2pg3A 232 3.37e-16 1wy5A 317 2.17e-14 c.26.2.5,d.229.1.1 121428,121429 1xngA 268 9.13e-14 c.26.2.1 122186 1ni5A 433 9.94e-14 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2hmaA 376 2.34e-13 1k92A 455 8.44e-13 c.26.2.1,d.210.1.1 68325,68326 2dplA 308 1.07e-12 1vl2A 421 4.38e-12 c.26.2.1,d.210.1.1 108708,108709 1ru8A 232 7.18e-12 c.26.2.1 97849 1kqpA 271 9.07e-12 c.26.2.1 72883 1korA 400 2.35e-11 c.26.2.1,d.210.1.1 72824,72825 1gpmA 525 3.25e-11 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2e18A 257 1.65e-10 1wxiA 275 1.69e-10 c.26.2.1 121400 2c5sA 413 6.60e-10 c.26.2.6,d.308.1.1 129950,129951 2d13A 227 4.40e-08 c.26.2.1 131121 1q15A 503 1.25e-06 c.26.2.1,d.153.1.1 95538,95539 1m1zA 513 1.95e-06 c.26.2.1,d.153.1.1 78457,78458 1ct9A 553 2.04e-05 c.26.2.1,d.153.1.1 31616,41834 1vbkA 307 0.008779 c.26.2.6,d.308.1.1 119957,119958 2dxnA 274 0.1105 1fs5A 266 1.566 c.124.1.1 65044 2qe6A 274 1.601 2ax3A 502 1.765 c.72.1.4,c.104.1.1 127477,127478 1y8cA 246 1.771 c.66.1.43 116563 2pfsA 150 1.862 2nxfA 322 1.905 1kpgA 287 2.048 c.66.1.18 68735 2dumA 170 2.211 1a76 326 3.349 1wznA 252 3.685 c.66.1.43 121525 1l1eA 287 3.746 c.66.1.18 73454 1t3iA 420 3.845 c.67.1.3 106354 1jf9A 408 3.953 c.67.1.3 62931 2yqzA 263 4.214 2fk8A 318 5.068 c.66.1.18 133648 1xtpA 254 6.201 c.66.1.42 116031 2bkxA 242 6.871 2blnA 305 6.966 b.46.1.1,c.65.1.1 128734,128735 1escA 306 7.376 c.23.10.1 31334 2z08A 137 7.402 2hy1A 280 7.508 1wjgA 137 8.583 c.26.2.4 114696 1ne7A 289 9.944 c.124.1.1 91833 1xdzA 240 10.20 c.66.1.20 115196 2gm3A 175 10.24 c.26.2.4 135354 2bw0A 329 10.52 b.46.1.1,c.65.1.1 129303,129304 2aotA 292 11.58 c.66.1.19 127098 2a0nA 265 11.97 c.1.2.1 125961 2bkwA 385 12.79 c.67.1.3 128714 1wyuA 438 12.82 c.67.1.7 121452 1vp8A 201 13.23 c.49.1.2 113947 1ss9A 311 13.25 c.68.1.4 105978 1jmvA 141 13.43 c.26.2.4 66897 2d5cA 263 13.44 1eluA 390 13.72 c.67.1.3 34434 1tq8A 163 13.81 c.26.2.4 107204 2gekA 406 13.99 1ga8A 311 14.68 c.68.1.4 34516 1v4vA 376 15.87 c.87.1.3 100313 2cvhA 220 16.28 2gmsA 390 18.14 2f8lA 344 18.80 c.66.1.45 133132 2dr3A 247 19.03 1y89A 238 19.50 1yzhA 214 20.72 c.66.1.53 124277 1yx1A 264 22.42 c.1.15.7 124169 2a22A 215 23.96 d.159.1.7 126025 1rxwA 336 25.66 a.60.7.1,c.120.1.2 98059,98060 1y4iA 398 25.78 c.67.1.3 122619 2hnkA 239 26.33 1vl5A 260 26.60 c.66.1.41 108720 1vl1A 232 26.65 c.124.1.1 108707 2i6gA 199 26.93 c.66.1.44 137096 1wtaA 275 27.04 2ieeA 271 27.24 3ce9A 354 28.79 1a76A 326 30.21 a.60.7.1,c.120.1.2 18091,33361 2ex4A 241 32.73 c.66.1.42 132516 1eg5A 384 32.74 c.67.1.3 34429 2p8jA 209 32.75 3b9qA 302 33.53 1ve3A 227 34.13 c.66.1.43 120010 1zodA 433 34.45 c.67.1.4 125437 2qytA 317 34.54 2pocA 367 35.10 1ta8A 332 35.36 d.142.2.2 112375 2gh1A 301 35.52 c.66.1.49 135170 1nnwA 252 36.07 d.159.1.5 80674 2jisA 515 36.29 1s3iA 310 36.48 b.46.1.1,c.65.1.1 98435,98436 1xxlA 239 36.68 c.66.1.41 116203 2ac7A 235 36.88 c.56.2.1 126543 1uteA 313 37.55 d.159.1.1 42078 1b9hA 388 38.04 c.67.1.4 34488 1tjyA 316 38.95 c.93.1.1 107062 3bxoA 239 39.94 1h5yA 253 40.24 c.1.2.1 65638 2fcaA 213 40.31 c.66.1.53 133262 2qy9A 309 41.42 1wyuB 474 41.66 c.67.1.7 121453 3bkxA 275 42.34 2cb1A 412 42.35 1luaA 287 43.33 c.2.1.7,c.58.1.4 78216,78217 2eq5A 228 44.11 1j8mF 297 44.31 a.24.13.1,c.37.1.10 62742,62743 2uxqA 402 44.65 1v73A 342 44.89 2yvtA 260 45.82 2gnpA 266 45.84 2dri 271 47.60 2rfgA 297 47.73 2a8yA 270 48.52 1w24A 182 48.69 d.159.1.7 120579 1vhwA 253 49.04 c.56.2.1 100706 2j0eA 266 49.77 2hdyA 440 50.88 1s95A 333 50.88 d.159.1.3 105375 2q02A 272 51.60 1v72A 356 52.80 c.67.1.1 119860 1mjhA 162 55.35 c.26.2.4 31639 1moqA 368 55.60 c.80.1.1 35302 1d2nA 272 55.67 c.37.1.20 32428 2okgA 255 55.84 1zu4A 320 55.86 2q0yA 153 56.37 1p77A 272 56.48 c.2.1.7,c.58.1.5 94214,94215 1jk7A 323 57.25 d.159.1.3 63144 1p3wA 404 57.60 c.67.1.3 87752 1f74A 293 58.47 c.1.10.1 29079 2ri0A 234 59.85 1jysA 242 60.96 c.56.2.1 77216 1ri5A 298 61.31 c.66.1.34 97502 1ls1A 295 62.16 a.24.13.1,c.37.1.10 78170,78171 1vkcA 158 62.24 d.108.1.1 113663 2ehhA 294 63.36 1yzfA 195 64.03 c.23.10.5 124275 1m7yA 435 64.26 c.67.1.4 78761 1zgdA 312 65.08 1kmkA 406 65.28 c.67.1.3 68696 1tqjA 230 65.44 c.1.2.2 107228 1jvnA 555 66.98 c.1.2.1,c.23.16.1 67355,67356 1hslA 238 68.27 c.94.1.1 35804 1gz0A 253 68.59 c.116.1.1,d.79.3.3 76391,76392 3bn1A 373 69.86 1v5xA 203 71.10 c.1.2.4 100377 1zosA 230 72.53 3b3fA 341 72.56 1wwzA 159 73.98 d.108.1.1 121380 1im8A 244 76.10 c.66.1.14 66212 2iojA 139 76.16 1mdoA 393 77.76 c.67.1.4 79013 2o0mA 345 78.16 1wy7A 207 78.70 c.66.1.32 121433 2h1rA 299 79.22 1jixA 351 81.00 c.87.1.1 63081 1v77A 212 81.35 c.6.3.2 108402 1fmtA 314 81.44 b.46.1.1,c.65.1.1 25758,34174 3beoA 375 81.53 1ecfA 504 83.31 c.61.1.1,d.153.1.1 34053,41820 1j5xA 342 83.99 c.80.1.1 71591 3caiA 406 84.45 1ivnA 190 84.91 c.23.10.5 83719 1s50A 259 85.89 c.94.1.1 118864 1ir6A 424 86.20 c.107.1.2 71342 2hc9A 491 86.82 1f8rA 498 87.38 c.3.1.2,d.16.1.5 30410,37974 2hf9A 226 87.83 1zx0A 236 88.54 c.66.1.16 125757 2jfzA 255 89.12 1i60A 278 89.57 c.1.15.4 71118