# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 1.97e-16 1sur 215 5.50e-15 2goyA 275 1.14e-14 1surA 215 1.46e-14 c.26.2.2 31620 1zunA 325 6.19e-14 c.26.2.2 125676 2pg3A 232 4.54e-13 1wy5A 317 1.63e-12 c.26.2.5,d.229.1.1 121428,121429 1xngA 268 2.41e-11 c.26.2.1 122186 2hmaA 376 3.64e-11 1ni5A 433 3.68e-11 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1kqpA 271 1.18e-09 c.26.2.1 72883 1k92A 455 1.42e-09 c.26.2.1,d.210.1.1 68325,68326 2dplA 308 2.92e-09 1ru8A 232 5.05e-09 c.26.2.1 97849 1vl2A 421 9.09e-09 c.26.2.1,d.210.1.1 108708,108709 2e18A 257 9.30e-09 1wxiA 275 1.00e-08 c.26.2.1 121400 1korA 400 4.87e-08 c.26.2.1,d.210.1.1 72824,72825 1gpmA 525 5.06e-08 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2c5sA 413 3.54e-07 c.26.2.6,d.308.1.1 129950,129951 2d13A 227 1.15e-06 c.26.2.1 131121 1q15A 503 5.24e-05 c.26.2.1,d.153.1.1 95538,95539 1m1zA 513 0.000104 c.26.2.1,d.153.1.1 78457,78458 1ct9A 553 0.003098 c.26.2.1,d.153.1.1 31616,41834 1vbkA 307 0.4377 c.26.2.6,d.308.1.1 119957,119958 1kpgA 287 0.5340 c.66.1.18 68735 2qe6A 274 1.412 2ax3A 502 1.517 c.72.1.4,c.104.1.1 127477,127478 1l1eA 287 1.732 c.66.1.18 73454 1y8cA 246 2.045 c.66.1.43 116563 2fk8A 318 2.281 c.66.1.18 133648 1fs5A 266 2.534 c.124.1.1 65044 1luaA 287 2.553 c.2.1.7,c.58.1.4 78216,78217 1escA 306 3.599 c.23.10.1 31334 2dxnA 274 4.512 2d5cA 263 5.472 1xtpA 254 5.494 c.66.1.42 116031 3bkxA 275 6.074 2gh1A 301 6.952 c.66.1.49 135170 1vl5A 260 7.020 c.66.1.41 108720 2z08A 137 8.159 2bkxA 242 8.356 1ne7A 289 10.06 c.124.1.1 91833 2dumA 170 11.63 1im8A 244 11.69 c.66.1.14 66212 2yqzA 263 11.78 1jk7A 323 12.47 d.159.1.3 63144 2blnA 305 12.49 b.46.1.1,c.65.1.1 128734,128735 1eluA 390 15.09 c.67.1.3 34434 3b9qA 302 16.14 2gm3A 175 17.71 c.26.2.4 135354 1vi2A 300 18.69 c.2.1.7,c.58.1.5 100726,100727 1af7 274 19.20 1nytA 271 20.21 c.2.1.7,c.58.1.5 86417,86418 1zx0A 236 20.59 c.66.1.16 125757 1xxlA 239 20.82 c.66.1.41 116203 1wznA 252 21.22 c.66.1.43 121525 1p77A 272 21.23 c.2.1.7,c.58.1.5 94214,94215 2pfsA 150 22.54 2yxdA 183 23.25 2bw0A 329 23.56 b.46.1.1,c.65.1.1 129303,129304 1bc5A 269 24.00 a.58.1.1,c.66.1.8 17929,34204 1vp8A 201 26.40 c.49.1.2 113947 2p7iA 250 26.56 1af7A 274 27.26 a.58.1.1,c.66.1.8 17928,34203 2hk9A 275 28.20 2gmsA 390 28.73 1zbqA 327 29.83 c.2.1.2 124862 2p8jA 209 31.35 1xdzA 240 31.41 c.66.1.20 115196 2a22A 215 32.58 d.159.1.7 126025 2yxeA 215 32.84 2q0xA 335 32.89 1y89A 238 33.02 2dr3A 247 34.26 1v72A 356 35.00 c.67.1.1 119860 2qytA 317 35.92 1ve3A 227 36.38 c.66.1.43 120010 1esc 306 36.62 2ex4A 241 36.97 c.66.1.42 132516 3bxoA 239 37.00 2okgA 255 37.03 1s3iA 310 37.82 b.46.1.1,c.65.1.1 98435,98436 1wl8A 189 38.06 c.23.16.1 120997 2qy9A 309 38.07 1muwA 386 38.48 c.1.15.3 79495 2f1kA 279 38.51 a.100.1.12,c.2.1.6 132772,132773 3bkwA 243 38.76 1rj9A 304 39.93 a.24.13.1,c.37.1.10 97553,97554 1xm7A 195 40.01 d.159.1.8 115473 2hnkA 239 40.19 2p90A 319 41.14 2j0eA 266 41.42 1jf9A 408 42.78 c.67.1.3 62931 2nxfA 322 43.26 1w85A 368 44.14 c.36.1.11 114335 1s95A 333 44.99 d.159.1.3 105375 2vc7A 314 45.23 1xafA 246 45.38 d.194.1.2 109535 1ri5A 298 45.56 c.66.1.34 97502 2p67A 341 45.85 2hdyA 440 48.27 1nvtA 287 48.72 c.2.1.7,c.58.1.5 86270,86271 1yzhA 214 49.02 c.66.1.53 124277 2avdA 219 49.55 c.66.1.1 127377 1ss9A 311 49.75 c.68.1.4 105978 1vl1A 232 49.82 c.124.1.1 108707 1gy8A 397 51.04 c.2.1.2 83376 1y4iA 398 52.12 c.67.1.3 122619 1j8mF 297 52.51 a.24.13.1,c.37.1.10 62742,62743 2cvjA 180 52.57 2g5cA 281 53.59 a.100.1.12,c.2.1.6 134646,134647 1uxoA 192 53.96 c.69.1.31 108121 1y1pA 342 54.68 c.2.1.2 122550 2o0mA 345 55.71 3c86A 328 55.83 1xzoA 174 56.19 c.47.1.10 122474 2ip2A 334 56.82 1st9A 143 58.02 c.47.1.10 98987 2qjcA 262 58.08 1zuhA 168 58.33 1zzoA 136 58.72 c.47.1.10 125913 2jfuA 291 59.02 3ch7A 266 59.18 2nloA 302 59.19 1dl5A 317 61.46 c.66.1.7,d.197.1.1 64720,64721 1i24A 404 62.07 c.2.1.2 83663 1sb8A 352 62.46 c.2.1.2 105410 1nsjA 205 62.90 c.1.2.4 28560 1rjdA 334 63.42 c.66.1.37 97558 2cb1A 412 64.12 2fnaA 357 65.87 a.4.5.11,c.37.1.20 133809,133810 2dwuA 276 65.92 1v2dA 381 66.68 c.67.1.1 108281 1wjgA 137 66.82 c.26.2.4 114696 1x19A 359 67.19 1g57A 217 67.64 d.115.1.2 60253 2gzxA 265 68.89 2pocA 367 69.04 1ws6A 171 69.08 c.66.1.46 121222 3ck2A 176 69.15 2o8nA 265 69.72 1vb5A 276 70.25 c.124.1.5 113604 2o57A 297 70.31 1y9aA 360 70.35 2ywrA 216 70.52 2bdtA 189 70.61 c.37.1.25 128344 1moqA 368 70.99 c.80.1.1 35302 3bn1A 373 71.90 1p3wA 404 72.82 c.67.1.3 87752 1qamA 244 72.91 c.66.1.24 34220 2i3dA 249 73.01 2hy1A 280 73.36 2eq5A 228 74.02 1jbwA 428 74.48 c.59.1.2,c.72.2.2 62860,62861 3bdvA 191 74.96 1o4vA 183 75.06 c.23.8.1 86628 1f0kA 364 75.24 c.87.1.2 35465 1z9tA 255 75.41 2i6gA 199 76.02 c.66.1.44 137096 2pxxA 215 76.32 3cc8A 230 76.38 2i6uA 307 76.47 2fpoA 202 76.48 c.66.1.46 133909 2a0nA 265 76.50 c.1.2.1 125961 1j1iA 296 76.82 c.69.1.10 83977 2ywiA 196 77.53 3b3fA 341 78.55 2qs9A 194 79.92 1trb 320 80.65 1rkxA 357 81.79 c.2.1.2 97631 1qz9A 416 82.06 c.67.1.3 96621 1h5yA 253 82.74 c.1.2.1 65638 2uyoA 310 83.80 2a40B 260 84.14 d.151.1.1 126139 2zbwA 335 84.29 2pbfA 227 84.40 2jfzA 255 84.58 2eggA 297 85.08 1fmtA 314 85.15 b.46.1.1,c.65.1.1 25758,34174 1h1dA 221 85.19 c.66.1.1 83452 2fhpA 187 85.73 c.66.1.46 133495 1dusA 194 85.76 c.66.1.4 34182 3b5eA 223 85.77 2q8uA 336 86.91 2ggtA 164 88.02 c.47.1.10 135156 1yumA 242 88.10 1jmvA 141 88.21 c.26.2.4 66897 2ozlA 365 88.96 2bsxA 253 89.06 c.56.2.1 129128 1o1yA 239 89.40 c.23.16.1 86554 2g0wA 296 89.74 c.1.15.4 134503 1p4cA 380 89.86 c.1.4.1 94100