# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 8.08e-17 1sur 215 7.36e-16 1surA 215 1.74e-15 c.26.2.2 31620 2goyA 275 9.57e-15 1zunA 325 3.17e-14 c.26.2.2 125676 2pg3A 232 2.13e-13 1wy5A 317 6.08e-13 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 4.88e-12 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xngA 268 1.20e-11 c.26.2.1 122186 2hmaA 376 9.88e-11 2dplA 308 3.68e-10 1k92A 455 4.50e-10 c.26.2.1,d.210.1.1 68325,68326 1kqpA 271 9.14e-10 c.26.2.1 72883 1vl2A 421 9.17e-10 c.26.2.1,d.210.1.1 108708,108709 1ru8A 232 1.48e-09 c.26.2.1 97849 1korA 400 2.40e-09 c.26.2.1,d.210.1.1 72824,72825 1gpmA 525 3.63e-09 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1wxiA 275 3.97e-09 c.26.2.1 121400 2e18A 257 6.11e-09 2c5sA 413 3.47e-07 c.26.2.6,d.308.1.1 129950,129951 2d13A 227 1.07e-06 c.26.2.1 131121 1q15A 503 7.76e-06 c.26.2.1,d.153.1.1 95538,95539 1m1zA 513 1.30e-05 c.26.2.1,d.153.1.1 78457,78458 1ct9A 553 0.000779 c.26.2.1,d.153.1.1 31616,41834 1vbkA 307 0.07270 c.26.2.6,d.308.1.1 119957,119958 1kpgA 287 0.3582 c.66.1.18 68735 1l1eA 287 1.104 c.66.1.18 73454 2fk8A 318 1.534 c.66.1.18 133648 2dxnA 274 1.767 2z08A 137 2.099 2dumA 170 2.118 1fs5A 266 2.141 c.124.1.1 65044 2ax3A 502 2.509 c.72.1.4,c.104.1.1 127477,127478 1eluA 390 3.197 c.67.1.3 34434 2qe6A 274 3.693 1y8cA 246 3.946 c.66.1.43 116563 2pfsA 150 4.856 1escA 306 5.946 c.23.10.1 31334 2bw0A 329 6.112 b.46.1.1,c.65.1.1 129303,129304 2yqzA 263 6.504 2gh1A 301 6.833 c.66.1.49 135170 2d5cA 263 6.977 1luaA 287 7.087 c.2.1.7,c.58.1.4 78216,78217 2gm3A 175 7.287 c.26.2.4 135354 2nxfA 322 7.406 2p8jA 209 7.585 1wjgA 137 8.067 c.26.2.4 114696 2bkxA 242 9.568 2blnA 305 10.43 b.46.1.1,c.65.1.1 128734,128735 1v73A 342 10.50 1vl5A 260 13.34 c.66.1.41 108720 1jf9A 408 13.37 c.67.1.3 62931 1ne7A 289 13.53 c.124.1.1 91833 1xtpA 254 15.13 c.66.1.42 116031 1s3iA 310 15.54 b.46.1.1,c.65.1.1 98435,98436 2gmsA 390 15.84 1p77A 272 16.43 c.2.1.7,c.58.1.5 94214,94215 2hy1A 280 17.06 1ss9A 311 19.88 c.68.1.4 105978 2o0mA 345 20.64 2bkwA 385 21.95 c.67.1.3 128714 1t3iA 420 23.75 c.67.1.3 106354 2rfgA 297 24.01 2pocA 367 24.11 3bn1A 373 24.24 2a0nA 265 24.31 c.1.2.1 125961 2okgA 255 24.52 2nuwA 288 24.91 2gnpA 266 25.28 2ehhA 294 25.84 1qg8A 255 27.13 c.68.1.1 34505 1mjhA 162 27.50 c.26.2.4 31639 2o3hA 285 27.64 2aotA 292 28.22 c.66.1.19 127098 1ve3A 227 29.66 c.66.1.43 120010 1w85A 368 30.10 c.36.1.11 114335 1wznA 252 31.15 c.66.1.43 121525 1xxlA 239 31.21 c.66.1.41 116203 2hk9A 275 31.51 3bxoA 239 31.57 2o57A 297 31.70 1jk7A 323 32.18 d.159.1.3 63144 2cb1A 412 33.50 1im8A 244 34.05 c.66.1.14 66212 1nytA 271 34.23 c.2.1.7,c.58.1.5 86417,86418 1af7 274 34.57 1s95A 333 34.85 d.159.1.3 105375 1vi2A 300 35.64 c.2.1.7,c.58.1.5 100726,100727 1y4iA 398 35.99 c.67.1.3 122619 2dr3A 247 36.28 1h5yA 253 36.59 c.1.2.1 65638 1vl1A 232 37.79 c.124.1.1 108707 1xm7A 195 38.15 d.159.1.8 115473 1p4cA 380 39.82 c.1.4.1 94100 2qytA 317 40.65 1zx0A 236 40.72 c.66.1.16 125757 2qjcA 262 40.83 1xdzA 240 41.60 c.66.1.20 115196 2zbwA 335 42.59 2jfzA 255 42.90 1vb5A 276 43.25 c.124.1.5 113604 1uteA 313 44.04 d.159.1.1 42078 2fnuA 375 44.15 c.67.1.4 133831 1jkxA 212 45.12 c.65.1.1 66813 1ir6A 424 45.50 c.107.1.2 71342 2ywrA 216 46.18 2i6gA 199 46.63 c.66.1.44 137096 2hnkA 239 46.82 2jfuA 291 48.13 1zbqA 327 52.85 c.2.1.2 124862 1xzoA 174 54.91 c.47.1.10 122474 3ck2A 176 55.26 1ga8A 311 56.19 c.68.1.4 34516 1w24A 182 56.70 d.159.1.7 120579 1meoA 209 56.76 c.65.1.1 79035 2ac7A 235 57.17 c.56.2.1 126543 3b3fA 341 57.45 2hdyA 440 57.61 2ex4A 241 57.69 c.66.1.42 132516 1f8rA 498 58.88 c.3.1.2,d.16.1.5 30410,37974 1x19A 359 60.40 1jmvA 141 61.03 c.26.2.4 66897 2vc7A 314 62.24 1dl5A 317 64.11 c.66.1.7,d.197.1.1 64720,64721 1qamA 244 65.11 c.66.1.24 34220 2yxeA 215 65.19 2p90A 319 65.21 1rkbA 173 65.38 c.37.1.1 111854 1y89A 238 65.69 1thfD 253 66.13 c.1.2.1 28535 2pv7A 298 66.35 1sb8A 352 66.44 c.2.1.2 105410 1vzwA 244 66.53 c.1.2.1 120553 3bkwA 243 67.42 1tq8A 163 68.08 c.26.2.4 107204 1fmtA 314 69.29 b.46.1.1,c.65.1.1 25758,34174 1s3zA 165 69.69 d.108.1.1 105250 2qcfA 260 70.30 1kmkA 406 71.92 c.67.1.3 68696 1yzfA 195 72.04 c.23.10.5 124275 2p7iA 250 72.38 2nloA 302 72.63 1nsjA 205 72.72 c.1.2.4 28560 3b9qA 302 72.75 2ri0A 234 72.87 1rkxA 357 74.32 c.2.1.2 97631 2dwuA 276 76.39 1af7A 274 78.05 a.58.1.1,c.66.1.8 17928,34203 1qz9A 416 78.15 c.67.1.3 96621 1y1pA 342 78.61 c.2.1.2 122550 1st9A 143 79.49 c.47.1.10 98987 3cc8A 230 80.54 1xg4A 295 81.46 1rv9A 259 82.56 d.194.1.2 105105 1s2wA 295 82.94 c.1.12.7 98407 2ip2A 334 82.96 2qy9A 309 83.19 2a22A 215 83.46 d.159.1.7 126025 3bkxA 275 84.59 1zuwA 272 84.85 2fcaA 213 85.05 c.66.1.53 133262 2pxxA 215 85.44 2eggA 297 85.47 1mdoA 393 85.68 c.67.1.4 79013 2jisA 515 85.82 1ri5A 298 87.60 c.66.1.34 97502 1v72A 356 88.68 c.67.1.1 119860 1rvgA 305 89.26 c.1.10.2 97920 1b9hA 388 89.37 c.67.1.4 34488 1bc5A 269 89.82 a.58.1.1,c.66.1.8 17929,34204 2g3aA 152 89.91 d.108.1.1 134557