# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 5.34e-09 1sur 215 1.25e-08 2goyA 275 2.80e-08 1surA 215 3.14e-08 c.26.2.2 31620 1zunA 325 6.18e-08 c.26.2.2 125676 2pg3A 232 6.57e-06 1ni5A 433 1.78e-05 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1wy5A 317 3.74e-05 c.26.2.5,d.229.1.1 121428,121429 2hmaA 376 4.12e-05 2dplA 308 4.39e-05 1xngA 268 7.02e-05 c.26.2.1 122186 1korA 400 0.000248 c.26.2.1,d.210.1.1 72824,72825 2e18A 257 0.000274 1k92A 455 0.000319 c.26.2.1,d.210.1.1 68325,68326 1vl2A 421 0.000904 c.26.2.1,d.210.1.1 108708,108709 1ru8A 232 0.001091 c.26.2.1 97849 1kqpA 271 0.001614 c.26.2.1 72883 1gpmA 525 0.002276 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2c5sA 413 0.003615 c.26.2.6,d.308.1.1 129950,129951 1wxiA 275 0.01091 c.26.2.1 121400 2d13A 227 0.3027 c.26.2.1 131121 1m1zA 513 0.3191 c.26.2.1,d.153.1.1 78457,78458 1mdbA 539 1.384 e.23.1.1 79008 1x19A 359 1.827 1q15A 503 1.891 c.26.2.1,d.153.1.1 95538,95539 1tw3A 360 4.175 a.4.5.29,c.66.1.12 107373,107374 1y8cA 246 4.265 c.66.1.43 116563 1dl5A 317 4.795 c.66.1.7,d.197.1.1 64720,64721 1x7dA 350 4.802 c.2.1.13 114927 1xtpA 254 5.588 c.66.1.42 116031 1jztA 246 6.414 c.104.1.1 63319 1z45A 699 6.533 b.30.5.4,c.2.1.2 124427,124428 2d1sA 548 6.948 1i2cA 404 8.308 c.2.1.2 83666 2ip2A 334 8.654 1kpgA 287 8.664 c.66.1.18 68735 1ek6A 348 10.28 c.2.1.2 29800 2qe6A 274 10.85 1qzzA 374 11.27 a.4.5.29,c.66.1.12 96719,96720 2r3sA 335 11.32 2b9eA 303 11.48 c.66.1.38 128124 2bw0A 329 11.53 b.46.1.1,c.65.1.1 129303,129304 1udcA 338 11.98 c.2.1.2 29785 1ve3A 227 13.99 c.66.1.43 120010 2j4dA 525 14.59 1y9aA 360 15.16 1yoeA 322 16.21 1ct9A 553 16.22 c.26.2.1,d.153.1.1 31616,41834 1np7A 489 16.22 a.99.1.1,c.28.1.1 80677,80678 2pqmA 343 16.79 2fk8A 318 17.20 c.66.1.18 133648 1wznA 252 17.24 c.66.1.43 121525 1i24A 404 17.53 c.2.1.2 83663 1li4A 432 17.77 c.2.1.4,c.23.12.3 84616,84617 1vqvA 306 18.22 d.79.4.1,d.139.1.1 114024,114025 1amuA 563 18.23 e.23.1.1 43351 2ouiA 360 20.99 2c40A 312 21.37 2olnA 397 22.56 2v9yA 334 23.28 1vbkA 307 23.74 c.26.2.6,d.308.1.1 119957,119958 1cjcA 460 24.34 c.3.1.1,c.4.1.1 30319,30604 2z08A 137 25.37 2pzmA 330 25.86 2df8A 325 26.03 1xvaA 292 26.71 c.66.1.5 34183 2p7iA 250 28.08 2i62A 265 28.63 1zkdA 387 28.87 c.66.1.52 125184 2b9wA 424 29.63 1u2zA 433 29.87 c.66.1.31 107626 3bxoA 239 32.02 1l1eA 287 32.49 c.66.1.18 73454 2ex4A 241 33.45 c.66.1.42 132516 2yxeA 215 33.73 1yt8A 539 33.74 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1t5hX 504 35.90 e.23.1.1 106449 2r5fA 264 36.30 1u3dA 509 36.48 a.99.1.1,c.28.1.1 107638,107639 2dxnA 274 36.97 1f3lA 321 36.98 c.66.1.6 59630 1ecfA 504 37.14 c.61.1.1,d.153.1.1 34053,41820 1ve1A 304 38.45 c.79.1.1 120007 2cvjA 180 39.13 2gagB 405 39.37 1jg1A 235 39.78 c.66.1.7 66661 2pjmA 226 39.79 1gy8A 397 40.01 c.2.1.2 83376 1k1xA 659 41.32 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1nw3A 416 41.55 c.66.1.31 86288 1moqA 368 41.61 c.80.1.1 35302 1auiA 521 41.79 d.159.1.3 42085 2i6gA 199 42.59 c.66.1.44 137096 2f8lA 344 42.92 c.66.1.45 133132 1owlA 484 43.25 a.99.1.1,c.28.1.1 93647,93648 2p6wA 213 43.51 1k0iA 394 43.77 c.3.1.2,d.16.1.2 67942,67943 1h2bA 359 45.21 b.35.1.2,c.2.1.1 90543,90544 1i1nA 226 45.52 c.66.1.7 71102 2pfsA 150 46.57 3c9uA 342 46.84 1im8A 244 46.84 c.66.1.14 66212 2ywlA 180 47.37 1kyzA 365 47.72 a.4.5.29,c.66.1.12 73312,73313 1jv1A 505 49.07 c.68.1.5 71892 1o54A 277 50.15 c.66.1.13 92482 2v03A 303 50.21 2o57A 297 50.59 1poiB 260 51.94 c.124.1.3 34155 3ciwA 348 52.75 1sekA 378 52.92 e.1.1.1 42675 2hc9A 491 53.00 1nnwA 252 53.96 d.159.1.5 80674 1vlmA 219 54.00 c.66.1.41 108836 2dwcA 433 55.05 2e58A 308 55.36 1s3eA 520 56.43 c.3.1.2,d.16.1.5 98426,98427 2gciA 360 57.78 c.123.1.1 134983 2z1uA 343 60.56 1ryiA 382 62.06 c.3.1.2,d.16.1.3 118813,118814 1vb5A 276 62.57 c.124.1.5 113604 2pocA 367 62.85 2masA 314 63.43 c.70.1.1 34810 1zsyA 357 64.93 1yxaA 398 67.96 2c5aA 379 68.71 c.2.1.2 129894 1fxoA 293 69.19 c.68.1.6 34524 1orrA 347 69.52 c.2.1.2 93460 1yb5A 351 69.65 b.35.1.2,c.2.1.1 116601,116602 2jhfA 374 70.23 b.35.1.2,c.2.1.1 138314,138315 1j5xA 342 70.69 c.80.1.1 71591 2dr3A 247 71.01 1s3iA 310 71.05 b.46.1.1,c.65.1.1 98435,98436 1pbeA 394 71.53 c.3.1.2,d.16.1.2 30338,37869 2v7bA 529 72.89 2p4hX 322 73.25 2h4pA 394 74.05 1lk5A 229 75.35 c.124.1.4,d.58.40.1 73960,73961 1jk7A 323 75.36 d.159.1.3 63144 2yzhA 171 76.20 2e7jA 371 77.27 2dumA 170 77.30 2e57A 637 77.52 1cozA 129 77.98 c.26.1.2 31598 1kjqA 391 78.50 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 3bkwA 243 78.63 1p0fA 373 79.42 b.35.1.2,c.2.1.1 87642,87643 2zbwA 335 79.43 2jfuA 291 80.14 1x74A 360 81.00 c.123.1.1 121771 2p0iA 456 81.84 1y1pA 342 81.87 c.2.1.2 122550 2e5fA 325 82.40 2q3bA 313 82.89 1l0bA 229 83.84 c.15.1.3,c.15.1.3 73391,73392 2h00A 254 85.30 c.66.1.54 135925 1wjgA 137 85.33 c.26.2.4 114696 2uyoA 310 86.54 2oz3A 404 86.71 1jeyB 565 87.09 b.131.1.2,c.62.1.4 90372,90373 2qb7A 397 87.30 1tkkA 366 88.07 c.1.11.2,d.54.1.1 107089,107090 1jsxA 207 88.17 c.66.1.20 71846 2amlA 373 88.61 2hy1A 280 89.05