# List of top-scoring protein chains for T0395.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1zunA 325 8.97e-30 c.26.2.2 125676 2goyA 275 8.38e-26 2o8vA 252 4.48e-23 2oq2A 261 4.77e-22 1surA 215 2.12e-20 c.26.2.2 31620 1gpmA 525 2.31e-15 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1wy5A 317 1.04e-14 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 1.78e-14 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2dplA 308 2.75e-14 2ywbA 503 5.50e-13 2hmaA 376 1.20e-07 2derA 380 3.16e-07 1xngA 268 1.66e-06 c.26.2.1 122186 2e18A 257 2.77e-06 2pg3A 232 1.73e-05 2c5sA 413 2.74e-05 c.26.2.6,d.308.1.1 129950,129951 1korA 400 0.000641 c.26.2.1,d.210.1.1 72824,72825 1m1zA 513 0.007129 c.26.2.1,d.153.1.1 78457,78458 1wxiA 275 0.01458 c.26.2.1 121400 1k92A 455 0.01685 c.26.2.1,d.210.1.1 68325,68326 1ru8A 232 0.03616 c.26.2.1 97849 1q15A 503 0.04482 c.26.2.1,d.153.1.1 95538,95539 1kqpA 271 0.05862 c.26.2.1 72883 2d13A 227 0.1715 c.26.2.1 131121 2nz2A 413 0.1871 1vl2A 421 0.2645 c.26.2.1,d.210.1.1 108708,108709 2pzbA 284 1.049 1vp8A 201 3.719 c.49.1.2 113947 2gmsA 390 5.166 2r0tA 390 5.195 3b8xA 390 5.211 1t2fA 333 6.423 c.2.1.5,d.162.1.1 99088,99089 1i0zA 333 6.535 c.2.1.5,d.162.1.1 61495,61496 1ua2A 346 8.563 d.144.1.7 113251 1yvlA 683 8.939 1qhhD 169 9.519 2qpxA 376 10.55 5ldhA 333 11.04 c.2.1.5,d.162.1.1 30158,42125 2c0zA 216 11.98 b.82.1.1 129615 2b4gA 317 13.21 c.1.4.1 127829 1aj8A 371 15.81 a.103.1.1 18900 1i7iA 292 16.68 a.123.1.1 71125 2hfpA 282 19.40 a.123.1.1 136388 2qgqA 304 20.75 6ldhA 329 21.46 c.2.1.5,d.162.1.1 30161,42128 1im4A 221 22.01 e.8.1.7 62581 1cbxA 307 22.20 c.56.5.1 33813 1jmvA 141 22.20 c.26.2.4 66897 1m4lA 307 24.05 c.56.5.1 78604 2i4jA 286 24.11 a.123.1.1 137049 1qnrA 344 24.17 c.1.8.3 28834 1ct9A 553 24.21 c.26.2.1,d.153.1.1 31616,41834 1ymeA 309 24.51 c.56.5.1 33804 5cpaA 307 24.55 c.56.5.1 33811 2ctcA 307 24.56 c.56.5.1 33802 1pytB 309 24.96 c.56.5.1 33820 1bavA 309 24.98 c.56.5.1 33806 1arbA 268 25.15 b.47.1.1 25766 1tt4A 396 27.06 d.128.1.3 107289 1yrwA 302 28.47 b.46.1.1,c.65.1.1 123942,123943 1z5rA 306 28.56 c.56.5.1 124488 1zzmA 259 28.69 c.1.9.12 125911 1qpiA 203 28.74 a.4.1.9,a.121.1.1 16072,19249 2blnA 305 28.86 b.46.1.1,c.65.1.1 128734,128735 2rkxA 255 29.30 1h4rA 314 29.43 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1a2oA 349 29.75 c.23.1.1,c.40.1.1 31120,32479 1sh7A 284 30.23 1k74D 283 31.04 a.123.1.1 68252 1prgA 270 31.23 a.123.1.1 19314 3prgA 278 31.48 a.123.1.1 19318 2om9A 278 32.59 a.123.1.1 139142 2j87A 177 32.92 2fupA 157 33.26 a.47.5.1 134184 1qhhB 273 33.35 2nmpA 403 33.58 2p4yA 277 33.67 2o8jA 281 33.69 1nyxA 276 33.85 a.123.1.1 86431 1knuA 274 34.05 a.123.1.1 77457 2q5sA 274 34.22 1ja0A 620 34.39 b.43.4.1,c.23.5.2,c.25.1.4 62798,62799,62800 1zgyA 272 34.55 a.123.1.1 125064 2hwqA 271 34.66 1wm0X 292 34.88 a.123.1.1 109404 1j9zA 622 35.41 b.43.4.1,c.23.5.2,c.25.1.4 62792,62793,62794 2tctA 207 35.67 a.4.1.9,a.121.1.1 16063,19240 2o7oA 207 35.92 a.4.1.9,a.121.1.1 138930,138931 1rdtD 284 38.39 a.123.1.1 111788 2v3cC 432 38.63 2d5kA 156 39.15 1amoA 615 39.82 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 2yyuA 246 39.88 9ldtA 331 39.91 c.2.1.5,d.162.1.1 30154,42121 2ogeA 399 40.16 1pcaB 308 40.54 c.56.5.1 33822 2h0gA 237 40.79 c.47.1.9,d.17.3.1 135929,135930 2bpqA 373 42.70 1gpwA 253 42.76 c.1.2.1 65460 1zvwA 378 43.58 2h0iA 237 43.78 c.47.1.9,d.17.3.1 135937,135938 1o5wA 534 44.02 c.3.1.2,d.16.1.5 92520,92521 2e6fA 314 44.11 2f8qA 353 44.53 2fglA 354 44.94 1z5vA 474 45.03 2c76A 520 47.49 c.3.1.2,d.16.1.5 130030,130031 3c3nA 312 47.51 1xmcA 612 48.19 c.43.1.3,c.43.1.3 115481,115482 2c72A 520 49.86 c.3.1.2,d.16.1.5 130018,130019 1tibA 269 49.89 c.69.1.17 34738 1v58A 241 50.05 c.47.1.9,d.17.3.1 108371,108372 2bk5A 520 50.26 c.3.1.2,d.16.1.5 128656,128657 2cjgA 449 50.26 1rvgA 305 50.32 c.1.10.2 97920 2bijA 305 50.38 1ja1A 622 50.44 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1s3eA 520 50.56 c.3.1.2,d.16.1.5 98426,98427 2nw0A 189 51.37 2c73A 520 52.06 c.3.1.2,d.16.1.5 130022,130023 1thfD 253 53.31 c.1.2.1 28535 2c75A 520 53.61 c.3.1.2,d.16.1.5 130026,130027 1xl7A 612 53.99 c.43.1.3,c.43.1.3 115438,115439 2trtA 217 55.90 a.4.1.9,a.121.1.1 16064,19241 1xmdA 612 56.40 c.43.1.3,c.43.1.3 115485,115486 3bcvA 240 58.17 1usuA 260 58.46 d.14.1.8 99885 2h0hA 237 59.28 c.47.1.9,d.17.3.1 135933,135934 1mw9X 592 59.67 e.10.1.1 91480 2ieeA 271 62.36 1qtwA 285 63.23 c.1.15.1 29392 1hk7A 288 63.50 d.14.1.8 90626 2nqhA 285 63.80 1rlgA 119 65.05 d.79.3.1 104981 1i10A 331 65.97 c.2.1.5,d.162.1.1 61499,61500 2djlA 314 69.22 1vh7A 265 70.79 c.1.2.1 100646 2cgeA 405 72.34 2a0nA 265 72.94 c.1.2.1 125961 1xeaA 323 73.51 c.2.1.3,d.81.1.5 109572,109573 1gt6A 269 73.68 c.69.1.17 76342 1qx4A 274 73.90 b.43.4.2,c.25.1.1 104624,104625 1i7pA 274 76.49 b.43.4.2,c.25.1.1 66048,66049 1w2zA 649 76.61 b.30.2.1,d.17.2.1,d.17.2.1 114106,114107,114108 1gvfA 286 76.97 c.1.10.2 70599 1auaA 296 77.41 a.5.3.1,c.13.1.1 16290,30882 1pjrA 724 77.52 c.37.1.19,c.37.1.19 32391,32392 1al3A 324 78.50 c.94.1.1 35835 2j5vA 367 78.67 1ksiA 642 81.87 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1eclA 597 82.34 e.10.1.1 43238 1cy2A 599 82.82 e.10.1.1 43241 1izcA 339 84.14 c.1.12.5 83838 2gcuA 245 85.72 1xauA 122 88.89 b.1.1.4 115041 3beoA 375 89.21 2nq9A 285 89.83